Zingiber officinale (ginger): 122055307
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Entry
122055307 CDS
T08725
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122055307
Spliceosome [BR:
zof03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122055307
Other components
Complex C specific factors
122055307
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Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
TIP_N
G-patch_2
TMPIT
Sulfotransfer_2
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
122055307
NCBI-ProteinID:
XP_042472613
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All DBs
Position
1B:complement(38987264..38989982)
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AA seq
855 aa
AA seq
DB search
MADDFEGLKRFGMENDYEGCEWIRGEFYYRSKKERPGQTRDDAINGAFSTASSDSYSDGG
GRLWRKRRKGDFISKADLSKPVQFVSTGTVMPSQEIKRDPQEEGDRSTGVPTSGHGLGYG
LRFQSNRKEIKGDEDAEDEDGFLSTAVGRRIKEGAQRREKEKESERGRPKLTKNSSGRRD
ASGASEMGKFEAHTKGIGSKLMKKMGFTEGSGLGKNEQGIVAPVEAKLRPKNMGIGFNGY
KEAKLPVLDEAPKEKMATPVAAGPSKEKRWLKQKRGRPEAEILTADEPPAKKQEQGNQAV
QKVLYMRGPQVQVLTSLDNLNTETEMKENDVPTPELLQYNVRQIVESTEVDIQKLDQHLR
REREKVVCLQEEKDKIMKEVMQQRKQLHVMQTIELLLEKVKEDSLSGVLTLDSLLTTFKD
LKEIFKDDYKLFNISCIVLSFAYPLFLRVFHGWQALQNPLLGVNLISSWRDLLQGDQPYD
FSENPFSGSYSQLISELILPAVRISVTNTWQARDPEPLLRFLEIWEKLLPPVILQSILEN
VVMPKLTTTVDSWDPRCETVPIHVWVHPWLPLLGQRLETLYHTISYKLGSVLHAWHASDA
SAYAILSPWKDVFDAASWEHLMVHYIVPKLKLALQEFQVTPANQKLDQFNWVMMWASAIP
IHHMVHMLEVDFFSKWQQVLYHWLRSDPNFNEVMQWYMGWKGVFPAELLANERIRVLLCS
SLDMMNQAVEGMEVVQPGATENVSRLRAIERQLEAQQKAPTYFSVHVIDVNAVGVVHELS
FKESIEAYAMEQGWFFKPKVGRYYNDRPVFGFGNISICIDSVNKLLYARVNGSTERWSAV
TLTQLQEMHRNTSRH
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatttcgagggtttgaaacgattcgggatggagaacgactacgagggctgc
gagtggattagaggcgagttctactaccgcagcaagaaggagcgccccggtcagacacgc
gacgacgccatcaacggcgccttcagcaccgcgtctagcgattcttactccgacggagga
gggcgcctctggcggaagcgccggaagggagacttcatctccaaggccgacctctccaaa
cctgtccagtttgtctccaccggcaccgtcatgcccagccaggaaatcaaacgggatccc
caggaagaaggggaccgatccactggtgttcccacttccggccacgggttgggatatggg
ctacggttccaatccaacagaaaggagatcaagggtgatgaggatgctgaggacgaggat
ggcttcctctctacggccgttgggaggaggattaaagaaggtgcccagcgccgtgagaag
gagaaggagtctgagagggggagaccgaaattgaccaagaattcttctgggagaagagat
gcatctggcgccagcgagatggggaagtttgaggcgcacaccaagggaataggttcgaag
ctgatgaagaagatgggattcacggaagggtctggattggggaagaatgaacaaggcata
gttgccccggtagaagctaagctccgtccaaagaacatgggcatagggttcaacggctac
aaggaggctaaattgcctgttttggatgaagcaccaaaggaaaagatggctactccagtg
gcagcaggaccttcaaaggagaagaggtggttaaagcagaagcgaggaagacccgaagct
gagattttgacggcggacgagccgccggctaaaaagcaggaacagggaaatcaggctgtt
cagaaggttctttatatgaggggacctcaagttcaggttttgacgagtctggataatttg
aacacggagactgagatgaaagagaatgatgtgcccacgcctgagctgctccagtataat
gttagacaaattgtggaatctactgaggttgacatacaaaagctggaccaacatttgaga
agggagagggagaaggtggtgtgcttacaggaggaaaaggacaagattatgaaagaggtg
atgcagcagaggaagcaacttcatgttatgcagacaattgaattactattagaaaaggta
aaggaggatagcttatcaggggttttgacgcttgattcgctgctaaccactttcaaagat
ctaaaagagatcttcaaagacgactacaagctctttaatatttcctgtattgttttatca
tttgcatatcctctgtttctcagggtgtttcatggatggcaagcattgcagaatccattg
cttggcgtgaatcttatatcttcttggagagatttgttgcaaggagatcagccttatgat
ttttcagaaaatcctttttctggttcttattcccagcttatcagtgaacttattcttcct
gctgtgaggatatctgtgactaacacttggcaggctagggatcctgaaccactgctccgg
tttctggaaatatgggagaagttactgccgccagttattttgcagtcaattctagaaaat
gtggttatgcctaagctaacgacgactgtcgattcatgggatccacgatgcgaaactgtt
ccaattcatgtttgggttcacccatggcttccattgctaggacagagattggagacgttg
tatcatacaatctcttataagctaggtagtgtcctccatgcttggcatgcaagtgatgcg
tcagcatatgccatactttctccatggaaggatgtgtttgatgcagctagttgggagcat
ctgatggtacactatattgttcctaagttgaaacttgctcttcaagaattccaggtgact
ccagctaatcagaagttagaccagttcaattgggtgatgatgtgggcatctgcaatccca
atccaccatatggttcacatgctggaggttgattttttcagcaagtggcagcaagtttta
taccattggttgcgctcagatcctaattttaatgaggttatgcagtggtatatgggctgg
aagggtgtcttccctgcagaattacttgccaacgagaggattcgagtgcttctatgttcg
agtttggatatgatgaaccaggctgtagaaggcatggaagtggttcaacctggtgctaca
gagaatgtcagccgtctgagagcgatagagagacagttagaagcacaacagaaggctcca
acttatttctcagtccatgtcattgatgtcaatgctgttggtgttgttcatgaattgagc
ttcaaggaatccattgaagcttatgcaatggagcaaggctggttcttcaaaccaaaagtt
ggtagatattacaatgatcgcccggtgtttggatttggtaacataagcatttgcatagat
tcagtgaataaattgctctatgcccgagtcaatgggagtaccgaacgctggagtgctgtg
acacttacgcagttacaggagatgcaccggaatacctcacggcattga
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