Zingiber officinale (ginger): 122055370
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Entry
122055370 CDS
T08725
Name
(RefSeq) cysteine protease ATG4B-like isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
122055370
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
122055370
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122055370
03029 Mitochondrial biogenesis [BR:
zof03029
]
122055370
Peptidases and inhibitors [BR:
zof01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
122055370
Membrane trafficking [BR:
zof04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
122055370
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122055370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
122055370
NCBI-ProteinID:
XP_042472712
LinkDB
All DBs
Position
3B:complement(775142..780235)
Genome browser
AA seq
491 aa
AA seq
DB search
MTELHECAVDSNFFDQNSEETVDLSTAAISKHKSIHSKLLKASFLASFFTSTFSVFERHS
SLFPDEGRPSKSRSYGWTTALKKLMGSGPMRRLQDRILGSIRTDTLSSASDIWCLGKCYK
LSLAELTSNPDPGNSFTAFLQDFSSRIWITYRKGFEPIGDSKFTCDVNWGCMIRSSQMLI
AQALIVHHMGRSWRKPLQKPYDLRYLEILHLFGDSSSCAFSIHNLLEAGKAYGLVAGSWL
GPYAMCRTWETIINTSKEQYDHEKRKQRFPMVLYIVSGDKDGEQGGAPVVCIEVASRLCH
DFTKREQDWAPILLLVPLVLGLEKINPRYIPLLWETFTFPQCLGILGGKPGASTYIVGVQ
DEKALYLDPHEVQSAVDIKMDDLEADCSSYHCSTVRHLPLDAIDPSLAIGFYCKDKDDFE
DFCSRSTQLADKSSGAPLFTVIQNIQPTRLIPDHDSAAASSGNDIGMAECQCSESFSIVD
EQEQEDEWQIL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattgcatgagtgcgctgtggattcaaatttttttgatcaaaattcagaagaa
acagtagatctctctacagctgctatttcaaaacataagtctattcatagtaagttgttg
aaggcttccttcttggcaagtttcttcacgtccacattctcagtctttgaaagacactcc
agcttatttccagatgaaggcagacccagcaaatccagaagttatggatggacaacagct
ttgaagaagcttatgggtagtggtccaatgaggagactccaagatcgcatactagggtca
atcaggactgacactttgagctcagccagtgatatatggtgtcttggcaagtgctataaa
ctctcacttgcagagttgacatcaaatccagatcctggcaatagttttactgcttttttg
caagatttctcttcaagaatttggatcacttaccggaaaggttttgaacccattggtgac
tcaaagttcacatgtgatgtcaactggggatgcatgattaggagtagccagatgcttatt
gctcaggcactgattgttcatcatatggggagatcttggagaaaacccttgcaaaagcca
tatgatcttcggtatcttgaaattctacatctttttggtgattctagctcatgcgctttt
tcaatacacaatcttcttgaagctgggaaggcttatggtttggttgctgggtcctggttg
ggtccttatgctatgtgtcgaacatgggaaacgattatcaacactagcaaagaacaatat
gatcatgaaaaacgcaaacaaaggtttcccatggttctatatattgtttcaggtgataaa
gatggggaacaaggtggagctccagttgtttgcattgaggttgcttctagactttgtcac
gattttaccaaaagggaacaagattgggcacctatactacttctggtgcctttggttctt
ggtttagaaaaaatcaaccccaggtatattcctttgctgtgggaaacgtttacatttcca
caatgcctcggcatcttaggtggtaaacctggtgcctcaacctatattgttggtgtgcaa
gacgagaaggcactctacttggaccctcatgaagttcagtcggctgttgatatcaagatg
gatgacttggaggccgattgctcttcataccactgcagcacggtgcgacacctaccacta
gacgcgatcgatccatcattggccattgggttctactgcaaagacaaggatgatttcgaa
gatttctgttcgcgttccacccagcttgcagacaagtcaagtggagcaccattgttcaca
gtcatccaaaatattcaacctaccagactcattcctgaccatgattctgccgcagccagt
tctggtaacgatattggaatggctgaatgtcagtgttccgaaagtttcagcatcgtcgat
gagcaggagcaagaagatgagtggcaaattctctaa
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