Zingiber officinale (ginger): 122055392
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Entry
122055392 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122055392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122055392
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122055392
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
122055392
NCBI-ProteinID:
XP_042472747
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Position
3B:987665..995834
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AA seq
330 aa
AA seq
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MANLPPTLSLGGASFGGGAAPPSPAAAPPSPAAAAASSQPTKDRKIASAEQLVLDLCDAE
LRENALLDLSKKRDIFQDLAPLLWHSFGTIAVLLQEIVSIYPALSPPTLSPVASNRVCNA
LALLQCVASHPDTRILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTE
VISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVL
GNMVVSLAEQPSPRLLKHIIRCYLRLSDNQRACGALRGCLPEMLKDGTFNNCLRDDPATR
RWLTQLLHNVSNGTLVAALQPGGLEHLMGN
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctaccacctacgctctcccttggtggagcttcgttcggcggaggggccgcc
ccgccctcccccgccgccgcgccgccctcccctgcagccgccgccgcctccagccagccc
accaaggaccgcaagattgcatcggcggaacagctcgtgttggacctctgcgatgccgaa
ctcagggagaacgctctccttgacctttccaagaaaagggatatatttcaagacttggct
cctttgttgtggcattcttttggcactattgcagtacttcttcaggagatagtttcaata
tatcctgcactttcacccccaacattgtcaccagtagcttcaaatcgagtgtgtaatgcc
cttgctcttctccagtgtgttgcatcacatccagatacacggattctttttctgaatgca
catattcctctttatctttatccatttttgaatacgactagtaaaacaaggccatttgag
tatttgaggcttaccagcttaggggttattggagctcttgtcaaggttgacgatactgag
gtcatcagctttcttctccagacagaaataattcctttgtgtctacgcaccatggagatg
gggagtgaactttctaaaaccgtggctactttcattgttcagaagatattattggacgat
gtgggcctgcggtatatatgtgccaccgcagagcggttctttgctgtaggtagtgtctta
ggcaacatggttgtgtcgctggctgagcaaccatctccaaggttacttaagcatataatc
agatgttacctaaggctgtcagataatcaaagggcatgcggagctttgcgcggatgtctc
ccggagatgctgaaagacggaacattcaacaattgtcttcgggatgacccagcaacccgc
cgttggcttacacaattactgcacaatgtgtccaatggaacactagtggcagctcttcag
cccggagggctcgagcatttaatgggcaactag
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