Zingiber officinale (ginger): 122055443
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Entry
122055443 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122055443
03036 Chromosome and associated proteins [BR:
zof03036
]
122055443
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122055443
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122055443
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122055443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
DD_DDX21-DDX50
ResIII
Cas3-like_C_2
NatA_aux_su
WAPL
Motif
Other DBs
NCBI-GeneID:
122055443
NCBI-ProteinID:
XP_042472823
LinkDB
All DBs
Position
3B:1603605..1608065
Genome browser
AA seq
686 aa
AA seq
DB search
MPALLSDPLSPEELKGSKKAKVSEKSKKDKKRKAEEEEEDKSDTTSEYSSEVPEKKKKKK
KKADANGPSPKKMKLKEKEEETDEPESGSDVDDPNALSNFRISKALVEALNSKGIKALFP
IQAMTFDLVLDGFDLVGRARTGQGKTLAFVLPILESLTNGRLKASKRTGYKRPPSVLVLL
PTRELAIQVHSEFEVYGGVVGLSSCCVYGGSPYRAQEMSIKRGVDILVGTPGRVKDHIER
GTLDLRALNFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPDWVKQISAR
FLKEDKKTADLVCNEKLKASATVRHLALSCLKSTRQQIIPDIIRCYSSGGRTIIFTETKE
SASELAGLLPGSRALHGDVMQQQREVILTGFRSGKFLVLVATNVAARGLDINDVQLIIQC
EPPRDVEAYIHRSGRTGRAGNTGVAILLYEPRYKFSVSRIEKESGVKFEYISAPQPAEIA
ELVGSEAASAISNVSDSVIPVFRSQAEQLLSTSGLSPVDLLAKALAKAAGFLDIKKRSLL
SSLENYVTVILQTGNTIYSPSFVFSVLGRHFPEEKIQNLENVSLTEDGYGAVFDVRADDV
DAFLEVQGKTSSNFSIEVLETLPPLQDRQNRGTNSGRGRFGRGGGGFSGGRGGFYGGRGG
GNRFSGRGNRGRGRGGGGWNNFSQRN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcttctctccgaccctctctcccctgaggagcttaagggatcgaagaaggcg
aaggtctctgagaagagcaagaaggataagaagaggaaggccgaggaggaggaggaggat
aagagcgacaccacgtccgagtactcatcggaggtccctgagaagaagaagaagaaaaag
aagaaggcggatgctaatggtccttcgccgaagaagatgaagctgaaggagaaggaagag
gagacggatgagccggagagcggtagtgatgtggatgacccgaatgccttgtcaaatttc
aggatctcgaaggccttggtagaggccttgaactcgaagggcataaaggccctgttcccc
atccaggccatgacgtttgatctcgtacttgatgggtttgatttagtgggtagagctcgg
actggtcagggtaaaaccttggcttttgtattgcctatattggaatcgctgacaaatgga
aggctcaaggcatcaaagagaactggttataaaaggcctccaagtgttttggtactactt
ccaactcgagaacttgctattcaggtacactcagaatttgaagtttatggtggggtagtg
gggttatcgtcgtgctgtgtatatggcgggtctccttatcgtgctcaagaaatgtccata
aagagaggggttgatatccttgttggaacaccaggacgtgtaaaagatcatatagagaga
ggaactcttgacctgagagctttaaacttccgggtccttgatgaagcagatgaaatgttg
agaatgggttttgtggaagacgtggagctaattctcggtaaggttgaggatgctaacaaa
gttcaaacacttctcttcagtgctaccttacctgattgggtgaagcagatttcagcaaga
tttctcaaggaagataagaaaacagctgatcttgtttgcaatgagaaactgaaggcgagt
gctactgttagacatcttgctctttcttgtttaaaatcaacaagacagcaaattattcct
gatattattcgttgctatagcagcggtggtcgaaccattattttcactgagacaaaagaa
tctgcatctgagcttgcaggattattacctgggtcaagagcattgcatggagatgtaatg
caacaacaacgagaagttatactaaccggatttaggtcaggcaagtttttggttttggtt
gcaacaaatgttgcagcgcgtgggctagacatcaatgatgtgcagctgattattcagtgt
gagcccccacgcgatgttgaagcttacatccatcggtctgggcgaactggaagggctggc
aatactggtgttgcaattctcctttatgaacccagatataagtttagtgtttccagaatt
gaaaaggaatcgggtgttaagtttgagtacatatctgcacctcagcctgctgagattgct
gaattagttggatctgaagcagccagtgctatttcaaatgtctccgacagtgttattcca
gtttttcgttcacaagcagaacagctcttgagcacttcaggactatcgcctgtagattta
ctagcaaaagcacttgctaaggctgctgggtttttggatataaaaaagaggtcactgctc
tcttctttggagaactacgtgacagtgattcttcagacaggaaacactatctattcacca
tcgtttgttttcagcgtcttagggagacatttccctgaagagaagatccaaaatctcgaa
aacgtctctcttactgaggatggttatggtgcagtgtttgatgtgcgggctgatgatgtc
gatgcatttcttgaagttcagggcaagaccagcagcaattttagtattgaggtgctggaa
acattgcctccactacaagatagacaaaacagaggcaccaactcagggcgaggaaggttc
ggccgtggtgggggtggtttctccggcggcagaggtggattctatggcggtaggggtggt
ggtaacagattctctggccgaggcaatcgtggaagaggtcgcggtgggggaggttggaac
aatttttcccagaggaattga
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