Zingiber officinale (ginger): 122055507
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Entry
122055507 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122055507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122055507
03036 Chromosome and associated proteins [BR:
zof03036
]
122055507
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122055507
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122055507
PBAF complex
122055507
GBAF(ncBAF) complex
122055507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Zn_ribbon_8
zf_Tbcl_Rhp7
HrcA_DNA-bdg
DZR
Motif
Other DBs
NCBI-GeneID:
122055507
NCBI-ProteinID:
XP_042472908
LinkDB
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Position
3B:2490424..2497424
Genome browser
AA seq
549 aa
AA seq
DB search
MPPSSEGSDLADRELYSIPASSSWFRWDEIHDTEKRSLPEFFDGSAASRNPRVYKEYRDF
IINKYREDPSKRITFTEIRKSLIGDVGYIQNVFRCLEKWGLINFWAKPVAGVPPPAEDDG
PKVVVEEGVPGGVQVVQASIPQRKRVATTGLGGENGFKLPSLTSYTDVFGDWAPKRGPVC
GVCGKQFNVSGTESLEGGLIVCPNCSKDKSQVNATVKDVKLETDDSANHVMSAWTDAETL
LLLESVLKHGDDWDLIAQHVRTKSKLDCISRLIQLPFGEHILDSINGAVAGSNSISKTTD
AKEMQSPIHEPPHEPDKVDGYIETDGKDVEESTPERPLKRRCYNSFVNAADSLLKQVACL
STVAGLQIAASAADAALTALGSENPSSSKVFSINKDPLNDLICTSDEPNSHFNVLKTEDP
DLELQKVTDIHKGGQEMNFGATTLQIKASIATALGATAARAKLLADQEEREIELLLASII
EAQLRKMQYKIKRLEELESMMEKEYSLLQKEKESILEEWLMVLEHSFKTGIPRWRDITLP
KPFLNTTTF
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgagctccgaaggaagcgacctcgccgaccgcgagctgtactccatccccgcg
tcctcgagttggtttcgttgggatgagatccacgacacggagaagcgatcgctcccggag
ttcttcgacggttccgctgcctcccggaaccctagagtctacaaggagtaccgcgatttc
atcatcaacaaataccgcgaggacccgtccaagcgcatcacttttaccgagatccgcaag
tctttaattggagacgtcgggtacatacagaacgtgttccggtgcctggagaaatggggg
ctgatcaatttctgggcgaagccagtggcaggggtgcctccgcccgccgaggatgatggg
ccaaaggttgtggtggaagaaggggtgccgggtggtgtgcaggtcgtgcaagcttccatt
ccgcagaggaagagggtggccacgacgggattgggtggagaaaacgggttcaagttacca
tctttgacttcgtacactgatgtgtttggagattgggccccgaagaggggtcctgtatgt
ggagtctgcggtaaacaattcaatgttagcggaactgagtcgttagagggaggactgatt
gtatgcccaaattgctctaaagataagagtcaggtcaatgctaccgtaaaggacgtgaag
cttgagactgatgacagtgccaatcatgtaatgagtgcatggacagatgcagagactctt
cttcttctagaatctgtgctaaagcatggagacgactgggatcttattgcgcagcatgta
cgaactaagagtaagctggattgtatttcaaggcttatacaactgccttttggcgagcat
attttggattccattaatggagcagttgctggtagtaactcaataagcaagacaactgat
gccaaagaaatgcaatccccgatacatgaaccaccacatgagcccgataaggtggatgga
tatattgaaactgatgggaaagatgttgaagaatctactccagaacgtcctttaaagagg
agatgctataattcttttgtaaatgctgcagattcactactaaaacaggtagcatgcttg
tctactgttgctggtttgcagattgctgcttctgcagcagatgctgctctcacagcattg
ggtagtgagaatccatcttcaagcaaggtcttttctatcaataaggatccattaaatgat
ttaatttgcacaagtgatgaacccaacagtcatttcaatgtattgaagactgaagatcca
gatctggagctgcaaaaagttactgatattcacaaaggtggccaagaaatgaattttggg
gctacaacacttcaaataaaggcttcaattgcaactgcacttggtgcaactgctgcacgt
gccaagctacttgctgaccaggaggaaagggaaatagaactgctgctggcatccattatt
gaggcgcagcttagaaagatgcaatacaaaatcaaacgtttggaagagttggagtccatg
atggagaaggaatacagccttttgcagaaggaaaaggaatctattttagaagaatggttg
atggtgctggagcactcgtttaagaccggaataccaagatggagggatattacactgccc
aaacctttcttgaacactaccaccttttag
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