Zingiber officinale (ginger): 122055552
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Entry
122055552 CDS
T08725
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1-like isoform X1
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122055552
Membrane trafficking [BR:
zof04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
122055552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
TPR_DOCK
Motif
Other DBs
NCBI-GeneID:
122055552
NCBI-ProteinID:
XP_042472964
LinkDB
All DBs
Position
3B:complement(3950236..3991259)
Genome browser
AA seq
1848 aa
AA seq
DB search
MEDYTSSSGYRFRRIQHQLCASNPEFEPLLNENMDQWPHLNELIQCYKADWLVDENKYGR
YESIAPPSFPNQIYEGPDTDMETEMRLASERISKNEDASYDDVPSTSGRQMSEISLHKSS
FNCQDMVHFGECPLPPYEPAFDWENERSLIVGQRTPETLPTHTSGLKITVKVLSLSFQVG
LIEPFYGTICLYNRDRKEKLSEDFHFRVLPTEGQDVNTSLLHRAVFSLDAPSASICLLIQ
LERTATEEGGVTTSVYSRKEPVHMAEREKQKLQVWSRIMPCRQSFAWTIFPLFESNNVAA
AGGAVSPSSPLTPNVSGPTPVDTFAEHVSKITLDGKQAQYSSGSSVIVEISNLNKVKESY
TEDLLLDPKRKVHKPVKGVLKLEVEKLHTSLIDVDNISDGGSIINDSNDAGDRFIETSLG
KHHSNGPDIPRSGSLKFIGINRKDICRNVSIPAGEDHPDFSDHFQAFDFRRMTRSEPFSQ
LFHCLYVYPLTVSLGRKRNLFIRIEMRKDDADIQKQPLEAVFPKEQGQTLEKYAHTQIAV
GARMACYHDEVKLCLPAILTPQHHLLFTFFHVDLLMKLEAPKPVIIGYAALPLTSHIQLL
SDVSLPILRELVPHYLQDNSKERLHFLEDGKNVFKLRLRLCSYLIPVNERIRDFFLEYDR
HNLRTSPPWGSELLEAINSLKNVDSTALLQFLQPILNLLLHLIGDGGETLQVAAFRAMVN
ILTRVQQESSDGADRNSFLVKYVDYAFNDFGGRQAPVYAGLSTVWGSLARSKAKGYRVGP
VYDDVLAMAWFFLELIVKSMALEQSRLFYHSLPSGEDVPPLQLKEGVFRCIIQLYDCLLT
EVHERCKKGLGLAKRLNSCLAFFCYDLLSIIEPRQVFELVSLYIDKFAGVCQSVLHDCKL
TFLQIICDHDLFVEMPGRDPSDRNYLSSVLIQEIFLTLDHDDLSQRAKAARILVVLMCKH
EFDSRYQKQEDKLYIAQLYFPFIGQILDEMPVFYNLNATEKREVLIVILQIIRNLDGPSL
VKAWQQSIARTRLFFKLLEECLVHFEHKKPADSMLLGCSSRRPDNEGHDSPKYSDRLSPS
INTYLSEASRQEVRGTPENGYLWHRVSPQLSSPNQPYSLREALAQAQSSRIGATTRALRE
SLHPILRQKLEVWEENLSTAVSLQVLEIADKFSVAAASQSIATDYGKLDCITSMMMGLFS
RSQPLAFWKVFFSVLNNIFSVHGATLMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVLG
LQILIRNSFYYFTNTTRLRVMLTITLSELMSDVQVTQMKPNGSLEESGEARRLRKSLEEM
ADCTMTVQFINDCGLPGNALEAFSENSTDNLWSWSEVKYLSDSLLQALDAALEHAVLASV
MTIDRYAAAESYHKLAMAYASVPDLHIMWLLHLCDAHQEMQSCAEAAQCAVAVAGVIMQA
LVGRNDAVWNREHVASLSKICPMVSNAVASEASAAEVEGYGASKLTVDSAVKYLQLANKL
FSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLSSIYDSILEQESSPITFIDATYY
RVGFYGTRFGKLDRKEYVYREPRDVRLGDIMEKLSRIYESKIDGSHTLHIIPDSRQVNAE
ELQPDVCYLQITAVDPVMEDEDLESRRERIFSLSTGSVRARVFDRFLFDTPFTKNGKTQG
GLEDQWKRRTVLQTQGSFPALVNRLLVVKSESLEFSPVENAIGMIETRTAALRNELEEPR
SSENDQLPRLQSLQRILQGSVAVQVNSGVLSVCKAFLSGEPATRLRSQELQQLIAALLEF
MAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILSEL
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggaagattacacatcaagcagtggttatcggtttagaaggatacaacaccaactgtgt
gcttctaatccagagttcgaaccattgctaaatgaaaatatggatcaatggccacacctt
aacgagttgattcagtgctacaaagctgattggctggtggatgaaaacaagtacggacgc
tatgaaagtattgcaccaccctcttttccaaatcaaatatatgaagggcctgatactgat
atggaaactgagatgcgccttgccagtgaaaggatttctaagaatgaagatgctagttat
gatgatgtccccagtacttcagggagacaaatgtctgaaatcagcttacataagtcatcc
ttcaattgtcaggacatggtgcattttggtgagtgtccactcccaccttatgaaccagct
tttgactgggaaaatgaaagatcactaatagttggtcaaaggactcctgaaactctacca
acccataccagtggattgaagataactgtgaaggtgctgtcattatcattccaagttgga
ctaattgagcctttttatggcacaatttgtttatataacagagacaggaaagaaaaattg
tctgaggacttccacttccgtgttttgccaactgaaggacaggatgttaacacttctttg
ttacatcgtgctgttttctccttggatgccccctcagcgtcaatttgcctgcttattcaa
cttgagaggacagctactgaggaaggaggagttacaacttctgtttattctcgtaaggaa
cctgttcatatggctgagagagaaaagcagaaactccaagtttggtcaaggatcatgcct
tgccgacaatcatttgcatggacgatatttccattgtttgaaagcaacaatgttgctgcc
gctggtggtgctgtatctcctagcagtcctcttactcccaatgtatctggcccaacccct
gtagatacttttgctgaacatgtttcaaaaatcactttggatggcaaacaagctcaatat
tcaagtggaagctctgttattgtggagatatcaaatttaaacaaagtcaaagagagttat
acagaggacttacttctggatcctaaaagaaaagtacacaagcctgttaaaggtgtgttg
aaattggaggttgaaaaacttcatacatcactcattgatgtggacaatatttctgacggt
ggaagcataatcaatgactcaaatgatgccggtgatcgttttattgaaacttctttagga
aagcatcatagcaatggtcctgatatccccaggagtggtagtttgaagttcattggcatt
aatcgaaaggatatttgtaggaatgtgtcaattccagctggagaagatcatcctgatttt
agtgatcattttcaagcttttgattttcggaggatgactagaagcgagccgttctcgcaa
cttttccattgtctttatgtttatcctttaactgttagcttgggtcgtaaaagaaatttg
ttcataaggatagaaatgcgaaaggatgatgctgacatccaaaagcagccattagaggct
gtatttccaaaggaacaaggtcaaactcttgaaaagtatgctcatacacaaattgcagtt
ggagctagaatggcgtgctaccatgatgaagttaaactttgcctccctgctattttgaca
ccccagcaccatctcttgtttactttttttcatgttgatcttctgatgaaacttgaagct
cccaagcctgtgattattggttatgctgcacttcctttgacttcccacattcagctgctg
tctgacgtatctttgcctattttgagagagctggttcctcattatctccaagataatagc
aaggagagactgcactttctagaggatggaaaaaatgtcttcaaattacgcttgaggttg
tgctcttatttgatccctgtcaatgagcgaatccgtgatttttttcttgagtatgaccgg
cataatctccgaacaagtccaccttggggatcagaacttcttgaggcaattaacagctta
aagaatgttgactccactgccttattacagtttctccaaccaatacttaatttgctcctc
catcttattggtgatggtggtgaaaccctgcaggttgcagcatttcgagctatggttaac
attctaaccagggtacaacaagaatcatctgatggagctgatcgaaatagttttcttgtg
aaatatgttgactatgcatttaatgattttggtggtcggcaagcaccagtttatgctggt
ttgtctacagtgtggggtagcttggcacgcagtaaggccaaaggctatagagttgggcct
gtttatgatgatgtgttggcaatggcatggttcttcttggaattgattgtgaagtcaatg
gccttagaacaaagtcgtctgttttaccacagtcttccttcaggcgaagatgttccaccc
ttgcagttgaaggaaggtgtttttcggtgtatcatacagctttatgattgcctcctgaca
gaggttcacgaacgttgcaaaaagggtttaggcttagcaaaacgcttgaatagctgtctg
gctttcttttgttatgacttgttgtccataattgagccacgacaagtgtttgaactggtt
tcattatatattgacaagtttgctggtgtttgccaatcagttttgcatgactgcaagcta
acatttttgcaaatcatatgtgatcacgatctctttgtggagatgcctgggagagatcct
tcagatagaaattacctttcatcagttctaatccaggaaatattcctcaccttggatcat
gacgatttatcacagagggcaaaagcagctcgcatcttagtggttctaatgtgcaagcat
gagtttgattctcgttaccaaaaacaggaggataagttatatattgctcagttgtatttc
ccttttattggacagatattggatgagatgccagtgttctataatttaaatgccactgaa
aaacgtgaagttttaattgtcatattgcaaattataaggaacttggatggtccatcactt
gttaaagcatggcaacaaagtatagcacgaaccagactgttctttaaactcctagaagag
tgtcttgttcactttgagcacaagaaaccagcagatagcatgttattgggatgtagttcg
cgtcgccctgacaatgaaggacatgattctccaaagtactccgatcgcctttcaccatcg
attaatacatatttatctgaagcatctcgtcaagaagttagggggacgcctgaaaatgga
tatctatggcacagggtcagtcctcagctaagttcacctaaccaaccatattctttaagg
gaagctcttgcacaagcacaatcttctagaattggagcaacaaccagagctttgcgagag
tctctacatcctatactgaggcaaaagttggaagtttgggaagaaaatttgagtacagca
gtcagtcttcaagttcttgagattgctgacaagttctctgttgctgcagcatctcaaagt
attgctactgactatgggaaactagattgcatcacatccatgatgatgggtcttttttcc
cggagtcaaccattggctttttggaaagttttcttttctgtgttgaacaatatattcagt
gttcatggagcaacactgatggcaagagagaacgatcgtttcttgaagcaaatagcattt
caccttttacgccttgcagtttttcgtaacgattccatcaggaaaagggctgtccttgga
ctacagatacttatcaggaattcattttactatttcacgaatacgacacgactgagagtt
atgctgacaattaccttgtcagagttgatgtctgatgtacaagtgactcagatgaagcct
aatggcagtctcgaagagagtggtgaagctcgacgtctcaggaaatcgttggaagaaatg
gcagactgcacgatgactgtgcagtttataaatgattgtggactacctggaaatgcactt
gaggcattttccgaaaattcaaccgataatctttggtcttggtcagaggttaaatatttg
tcagacagtcttcttcaggcccttgatgcagcccttgagcatgcagttttggcttctgtt
atgaccatagataggtatgcagctgctgaaagctatcataagcttgctatggcttatgca
tctgttccagaccttcacattatgtggttactgcatctatgtgatgcacatcaggagatg
caatcatgtgcagaagcagctcaatgtgcagttgctgtagctggtgtcattatgcaggcc
cttgttgggaggaatgatgcagtttggaatagggaacatgtagcttctttgtccaagatt
tgcccgatggttagcaatgcagttgcctctgaagcatctgcagctgaggtggaaggatat
ggtgcatcaaaactcactgtggattctgcagttaaataccttcagctcgctaacaagctt
ttctcacaggcggagctttatcatttttgtgccaacattttggaactcataattccagtc
tataaaagcaggagggcttatggccaacttgctaagtgtcacacttccctttccagtatt
tatgattcaatacttgagcaggaatcaagccccattacttttatagatgccacctactac
cgagttggattttatggaactcggtttggaaagctggataggaaggagtatgtgtatcgg
gagccacgagatgttcgtctaggtgacataatggagaagcttagtcgcatatatgagtct
aagattgatggaagtcataccctgcatattataccagattctagacaagtcaatgcagaa
gaattgcaacctgatgtctgttatctacaaataacagctgtggaccctgttatggaggat
gaggacctcgagagtcgaagggagagaattttttctttgtccactggaagtgtgcgggcc
agggttttcgacaggttcttgtttgataccccgtttactaaaaatgggaagacccaagga
ggcttagaggatcaatggaaaagacgaactgtactccaaactcagggttcatttcctgct
ttggtgaacaggcttttggttgtcaaatccgaatccttggagttttctccagtagaaaat
gctattggaatgatagaaaccaggacagctgctctaagaaatgagctagaagagccacgt
agctcagaaaatgatcaactcccacgtcttcaaagtctacagaggatactccaaggaagt
gttgcagtgcaggtgaacagcggagttcttagtgtatgcaaggcctttttatctggcgag
cctgctacaaggcttcggtctcaagaattgcagcaacttatagcggccctgcttgaattt
atggctgtttgtaaacgggcaatccgagtacattttaggctgattggcgaagaagatcag
gacttccacacacagcttgtaaatggattccagtcccttacagctgaactatcgcactac
attcctgccatcctttccgagctttaa
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integrated database retrieval system
