Zingiber officinale (ginger): 122055671
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Entry
122055671 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122055671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122055671
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122055671
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122055671
Complex B
122055671
Complex C
U2 SnRNP specific factors
122055671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
122055671
NCBI-ProteinID:
XP_042473146
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All DBs
Position
3B:6044043..6047966
Genome browser
AA seq
767 aa
AA seq
DB search
MSKRKFGFEGFGINRPATYNFERTPAPQRLYVPPTSRGGGDNHEDADLDNIDYDQSDSPD
RPIAGGGGDDLEIDPLDAFMEGIQEEIRVPPPASTMSKDKGEKYDDEDEDDPVESFLRSK
KDAGLTLAWEALHAGYDSDEEVYAAAKAVDLGAIEYDSDDNPIVMDKRKIEPIPALDHST
MDYEPFNKDFYEENPSVSGMSDHEISEYRKTLAIRVSGFDIPKPIKLFEDCGFPSPLMGA
IAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEVDKGQGP
IGVICAPTRELAHQIYLEAKKFSKPYGLRVAAVYGGVSKLDQFRELKAGCEIVVATPGRL
IDLLKMKALTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVER
LAREILSDPLRVTVGEVGMANEDITQVVNVIPSDAEKMPWLLDKLPGLIDDGDALVFASK
KATVDEIESQLLQKGFKIAALHGDKDQASRMDILQKFKSGTYHVLVATDVAARGLDIKSI
KSVVNYDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAVGQDVPA
ELMDLAMKDGKFRAKRDARKGSGGRKGAGRGKGGGGGGRGVRGVDFGLGIGYNPETTNAA
TPSHSVQSNRSSTVNSLRTGMMAQFKSNFVAASSSTKSNVSSIARPALPGFVSGGSIGGD
GYKARLVNPFVPASKDGENKNENNNHKGSESSRQRPRERKRPSGWDR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaagtttggtttcgagggattcgggatcaaccgccccgccacctacaac
ttcgagagaacgccggctccgcagcgcctctacgtcccacctacctcccgcggcggcgga
gacaaccatgaggatgcggacctcgacaacatcgactacgaccagtccgactctcccgat
cgtcctattgcaggaggcggcggagacgacctcgagatcgacccgctcgacgccttcatg
gaggggatccaggaggagatccgggttccgcctcctgcctctacgatgtcgaaagacaag
ggagaaaaatatgatgacgaggacgaggatgaccctgtggagagcttcttgcgatcgaag
aaggatgccgggttgactctggcatgggaggctcttcacgctgggtatgattcagatgaa
gaggtgtatgctgcagccaaagcagtggacttaggggcgatagaatatgactcagatgat
aacccgattgtcatggataaacggaagatcgagcccattccggcattggatcatagcact
atggactacgagccgtttaacaaggatttctacgaagagaatccttcagtatcaggtatg
agtgatcatgaaatttctgagtaccggaaaactttagccatccgagtctcgggttttgat
ataccaaaaccaatcaaactctttgaagattgtgggtttccttctccgctaatgggtgct
attgcaaagcaggcctatgaaaaaccaacaacaatacaatgtcaggctctccccattgta
ctgtctggtagagatattattggcattgcaaaaacaggttctggtaaaactgctgcattt
gttctccctatgattgttcatattatggatcagcctgaagttgacaaaggacaaggtcca
ataggtgtgatatgtgctccaacaagggaattggcacatcagatatatctagaagctaag
aaattttcaaaaccttatggacttcgtgttgctgctgtgtacggtggggtatccaaatta
gatcagttcagagaactcaaggcaggttgtgaaatagttgttgccactccaggaagactt
attgacttgcttaagatgaaggctctgacaatgactagggcaacttatcttgtactagat
gaagccgatcgaatgtttgatcttggctttgagccacagattaggtctattgttggtcaa
attagacctgatcgacagactttacttttctcagctactatgccatacaaagttgaacga
ttagcaagagaaattctttctgatcctctaagggttacagttggtgaggtaggaatggca
aatgaggacattactcaggttgtaaatgtaatcccttctgatgctgagaagatgccttgg
cttcttgataagctacctggattgattgacgatggggatgctcttgtatttgcctcaaag
aaggctacagtggatgagattgaaagtcagttgcttcagaaaggtttcaaaattgcagcc
cttcacggggacaaggaccaagcctctcgcatggacattttgcagaagttcaaatcagga
acatatcatgttcttgtggccactgatgttgctgcccggggacttgacataaaatcgatc
aagtcagttgttaattacgatattgctagagatatggacatgcatgtccatcgcattggt
cgaacaggccgtgctggggataaagatgggactgcatacactcttatcacacaaaaggaa
gcacgctttgctggtgaattagtgaatagcttgatagctgttggtcaggatgtccctgct
gagttgatggatcttgctatgaaggatgggaagttcagggctaaacgtgatgcacgaaaa
ggttctggtgggagaaaaggtgcaggtagaggaaaaggtggtggcggaggtgggcgtggt
gtacgtggtgtggacttcggactcggtattggctacaatccagagactacaaatgcagca
acaccttctcactctgttcagagtaatagatcatctactgtcaattcgttgagaaccggg
atgatggcacaattcaaaagcaattttgtggctgcctcatctagtactaagagtaatgta
tcctccattgcaaggccagccttacccggttttgtctctggtggttcgatcggaggggat
ggatacaaggcacgcttggttaatccttttgttcccgcttccaaggacggagaaaacaaa
aatgagaataacaaccacaagggctctgaaagctcaagacagaggcctcgagaaagaaaa
cgtccttccggatgggatcgctag
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