Zingiber officinale (ginger): 122055799
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Entry
122055799 CDS
T08725
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122055799
03036 Chromosome and associated proteins [BR:
zof03036
]
122055799
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122055799
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122055799
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122055799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
AAA_22
UvrD_C
ATPase_2
AAA_16
DEAD
PhoH
Helicase_RecD
AAA_7
AAA
nSTAND3
MOV-10_Ig-like
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
122055799
NCBI-ProteinID:
XP_042473360
LinkDB
All DBs
Position
3B:complement(8292146..8296441)
Genome browser
AA seq
923 aa
AA seq
DB search
MSTFGENDCEDQYSEIGEKPEIGFMDFEDDKSFHNFDPLEGPVVITAPFPLVHGKPQSVL
IGETSAASIDIRNTTSDPVVLWSIRIFSSNPEDSFVLSMMKPPSDNATEEERQNFVGDYN
LEDRVLQPGQTLKVWLSCKPKEIGLHSSVIHFDLQDEKIERVAFLIADDNISRDLFSNKP
YKANSRRKMFEHTQYVAGPRPSRPNSQMYRYILPQFNIPRDLREMIENKQVPDVIIEGLN
DGNYAKFFSALLVMEEINLEQEMRGYDMVGATMKRKGNYFLCLEVPGLAEKRPSLVSGDH
VLAQLATDDAHDRQSYQGFIHRVEADEIYLRFDNVFHHRHQEGDIYNVSFTYNRVCMRRL
YQAAHAAESLGAELLFPAQTPQRRAIKRSFQPINPNLNREQACAVEMILGCKGFPPYVIY
GPPGTGKTVTLVETILQLYKTQKRARIVVCASSNSAADHILEKLLDRDGTGVRTNEMFRL
NATSRAYEDVKPDFLRFCFFDEMVFKCPPLRALLKYKIIISTYMSASLLYTEGIRRGHFS
HIILDEAGQASEPEAMIPISNLSIKDTVIVLAGDPKQLGPVIYSRQAENYGLGKSFLDRL
FEHKYYGGTDENYVIKLVRNYRCHPAILDLPSRLFYNGELIASREDTISTMYDYMDLPNK
SFPVLFIGIQGCDEREGSNPSWFNRIEASKVVEIIRKLRRNTDLCEDDIGVITPYRQQVL
KLKKALESLEMPELQVGSVEQFQGQEREVIIISTVRSTIKHNEFDRVHQLGFLSNPRRFN
VAITRAKSLLIIVGNPHIITKDCNWDKILRHCADNGSYQGCPLPPPEANDHINGASSEHD
SKCEDSQNDHINDASSEHDSKYEDSQPYNDNDAKLAEDETAQQEVGWSDLPSSNNYGSNW
NDDLPKTNVVTWGDFVIEPTGWD
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatttggcgagaatgattgcgaagatcagtactctgaaattggagaaaagcct
gagataggttttatggattttgaagatgataagtcctttcacaattttgatccattggaa
ggtcctgttgttattactgcccctttccccttagtccatgggaaacctcagtctgtcctg
attggagaaacatcggcagcatcaattgatatcagaaacaccaccagtgatccggtagtg
ctctggagcatccggatcttctcgtctaatccagaggacagttttgttctatcaatgatg
aagcctccatctgacaatgctacagaggaagaaaggcaaaactttgtgggtgattataat
ttggaagatagggtgcttcagccagggcaaaccctcaaagtttggctttcatgcaagcca
aaagagattgggctacatagttctgttattcatttcgatctgcaagatgagaaaatcgaa
cgtgttgcttttctgattgcagatgataacatttcacgggatttattttccaacaagcct
tacaaagcaaattctaggaggaaaatgtttgaacatacacagtatgtagcaggacctcgc
ccatctcggccaaacagtcaaatgtacagatacattcttcctcaatttaatattccccgg
gatctacgcgaaatgattgaaaataaacaggttcctgatgtcattatagaaggcttaaat
gatggaaactatgcaaaattttttagcgccctactagtcatggaggaaattaatcttgag
caagagatgcgggggtacgacatggtgggtgcaactatgaaaagaaagggaaactacttt
ttgtgtctagaggtacctggattggccgagaaaaggccgtcgctggtttctggggaccat
gtgttggcacagctagcaacagatgatgcacatgatagacaatcttatcagggtttcatt
cacagagtggaggcagatgaaatatacctgagattcgataatgtttttcaccaccgccac
caagaaggtgacatttataatgtcagcttcacgtacaatagagtgtgcatgagaaggttg
taccaagcagcccacgcggcagaaagcttaggtgcagagcttctctttccagcgcagaca
cctcagagaagagctatcaaaagatcttttcaaccaataaatccaaatctgaacagggag
caggcctgtgcggttgaaatgatacttggctgcaaaggttttcccccttatgtaatttat
gggcctccagggactggcaagactgttacacttgttgaaactatattgcagctctacaaa
acccagaaaagagctaggatcgttgtgtgtgcttcatctaatagtgctgccgatcatatt
cttgaaaaactcttggatagagacggaactggtgttcggacaaatgagatgtttcgattg
aacgcaaccagccgagcatatgaggatgtgaagcctgattttcttcgcttttgcttcttt
gacgagatggttttcaaatgcccccctctgagagccttgctaaagtacaagatcatcata
tcaacctacatgagtgcatcgctactatatactgaaggcattcgtagagggcatttctcc
cacatcatattggatgaagcaggtcaagcatctgaacctgaagccatgattccaatctca
aacttgagtatcaaggacactgtcatcgtgcttgctggagatcctaagcaattgggacct
gtcatttattcaagacaagctgagaattatggtttgggaaaatcattcttggataggctt
ttcgagcacaagtattatggaggcactgacgagaactatgtcataaaactggttagaaac
tatcgttgtcatccggctatcttggatcttccttcaaggcttttctacaatggcgagttg
attgcttctagagaggatacaatctcaacaatgtatgactatatggaccttccgaacaag
tccttccctgtccttttcattggaattcaaggatgtgatgaaagggagggtagtaatcca
tcatggtttaatagaattgaagccagtaaagtggttgagatcatcagaaaattgaggagg
aatactgatctgtgcgaggatgatattggagtgatcactccataccgccaacaagttctc
aagttaaagaaagcactcgagtctctggagatgccagaactgcaagttggtagcgtggag
caatttcaagggcaagagagggaggttataattatatctacagtgaggtccactatcaag
cataatgagttcgatcgtgtgcaccaattgggattccttagcaaccctagaaggtttaac
gttgccattactcgtgctaaatctctgctcatcatagtaggcaatcctcacatcattacg
aaggattgtaattgggacaagattctcaggcactgtgcagataatggttcatatcaaggt
tgtcctctcccaccaccagaggcgaatgaccatatcaatggtgcatcatcggaacatgat
tccaaatgcgaagattcgcagaatgaccatatcaatgatgcatcatctgaacatgattcc
aaatacgaagattcgcaaccttacaacgacaacgatgccaaattggcggaggatgaaaca
gctcaacaagaagttggatggagtgatttgcctagctcgaacaactacggctccaactgg
aatgacgacctcccaaaaactaatgtcgttacgtggggtgattttgtcatagaaccaact
gggtgggattaa
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