Zingiber officinale (ginger): 122055922
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Entry
122055922 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122055922
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122055922
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122055922
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122055922
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
SR proteins
122055922
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
122055922
NCBI-ProteinID:
XP_042473547
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All DBs
Position
3B:complement(12460982..12468073)
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AA seq
233 aa
AA seq
DB search
MADSSRGKYSHSLSPYRGHSKSRSPRGLSHSRSRSPLRGRARSRSRSRDREAANFGNTLY
VTGLSSRVTERDLEHHFSKEGKIVGCHLVVEPRTRASRGFAFVTMDNVKDADRCIKYLNQ
SILEGRYITVEKSRRGRARTPTPGKYLGVASTRDGRRGERDRYFGGYSRDDYGGGYQRSP
RHSPYRGGHEYSPQRSPYYDSRYRRGRSRSFSPYGYGSPPRASYGRRVNGYPR
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcttcacgggggaagtactctcattcactgtctccatatcgtggtcattcc
aaatcaagatctcctaggggtttgtctcactcaaggtctcggtctccacttaggggtcgg
gcaagatctcgatctagaagtcgggacagggaggcagcaaattttggaaatactctttat
gtaactggcctttcatccagggttacagaaagggacttggaacatcacttctccaaggaa
ggaaagattgtgggatgtcacctggttgttgaaccgcgtacacgtgcttctcgtggcttt
gcatttgtgactatggacaatgtaaaagatgctgaccgttgtatcaaatacctcaaccaa
tcaatcctggaaggacgttatataacagtcgagaagtcgaggagggggcgagcacggaca
ccaacacctggaaaataccttggtgtggccagcacaagagatggtcgccgaggtgagcga
gatagatattttggaggctacagccgtgatgactatggtggtggttaccagagatctcct
aggcactctccttatcgtggtggccatgaatactcgcctcagagatcaccttattatgat
agcaggtacagaagaggacgatcgaggtcattttctccttatggttatggcagcccaccc
agagcatcctatgggcgtcgtgtgaatggctatcctcgatag
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