Zingiber officinale (ginger): 122055937
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Entry
122055937 CDS
T08725
Name
(RefSeq) serine/threonine-protein kinase VPS15-like isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
122055937
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
zof01001
]
122055937
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122055937
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122055937
Protein kinases [BR:
zof01001
]
Serine/threonine kinases: Other
VPS15 family
122055937
Membrane trafficking [BR:
zof04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122055937
Autophagy
Autophagosome formation proteins
PI3K complex
122055937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
HEAT
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
PEP5_VPS11_N
NBCH_WD40
Cohesin_HEAT
Pkinase
Vac14_Fab1_bd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Cnd3
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
122055937
NCBI-ProteinID:
XP_042473567
LinkDB
All DBs
Position
3B:12986631..12996579
Genome browser
AA seq
1324 aa
AA seq
DB search
MDIFSLGCVIAELFLEGQPLFELSQLLAYRRGQYDPCQCLEKIQDEGVQKMILHMIQLNP
NARLSSQSYLQNYASSIFPSYFSPSLHKFFSYLVPLDSDARVAAIERAFHKIHAQMMSVR
SSDDVILDSSASPKLTDEEGFQNIKGVTQSMLLARGDARSRSRKSTIPGQVQLVGDITSL
LRDVEQINHSVHSDVTQKNATILSTNDSDTDCTRFSKQSRTLKNQPSNDLQGHKQKDFLF
LRNIFKGELDSLMDAYDSQTDTYRMPSFPRSGDKNSCDGMVLIASLVCSCIRSVKQPQLR
RAGLLLLKTTSLYTDDEDRLQHVLPYVIAMLSDPAAIVRCAALETLCDILTLVQDFPPSD
AMIFPEYIFPMLSMLPDDPEESVRICYASNISKIALSSYRFLIQAETIAGGGPLGKPTIA
QKSQPLIMESPSKQRGYRIDSQLMQLRRLLAEIVQELVMGPKQTPNVRRALMQDIGHLCY
FFGQKHSNDFLLPILPAFLNDRDEQLQSAFYKHIIFFCYFVGQVSVEEYLLPYIEQALSD
EMEVVIVNGLDCLSILCKSGFLRKRTLLGLIEKVFPLLCYPIYWVRRSAVTFIAASSKSL
GPVDSHVYLSPVLLPFLDRVPTSLSSETSLLSCLKPPVSKVIYHQVLENARSSDMLERQR
RIWYNSSTYSNQLETIEHTRKVSGEVKSNNISCKRESDLQSGKYANSTTLNASLPVVEDV
AVRTGTSFQISGSMDIRDSVYLEKTQFSAFTSPQVTAANTSLCDVPTDGIPLYYVSLNKL
ASGIGPESSCQWNPKGVAASSMRLEPLDKPFGLSNSVPPKLVSSSFLNISTNIKQVQKQA
DVVSRDSEQSAFLTSKFQDITVYDALKGSSLNDASQSELSGLSTFARASSVPDIGWKPRG
VLVAHLQEHKSSVNDVTVSNDHTFFVSASDDSTVKIWDTRKLEKDISFRSRLTYSLDGCR
ALCTAMLRGTAQVVVGASDGTIHLFSVNYISRGFGNVIEKYSGIADIQNRKIGEGAILSV
LNCSSIDSSISQTVLFTTQRCGVHLWDTRANSDAWTFKAVPDEGYVSSLVMGQCGNWFVS
GSSRGVLTLWDLRFLLPVNSWQYPMGCPVEKLCLLIPPLNSVSAMTRPLVYVAAGSNEVS
LWNAENGSCHQVLRVASGEHEGESTHFSLATERPSRKQSSQFDGKRNINSKYRIDELNEP
APRLQGIRSLLPLPGGDLLTGCADLTIRYWDHTSPEHSYCVCGPLTKGVGNDGYYDIRSR
FGVQIVQQEMNKRSTKLTQKTFLSTAATDSAGCHRDSVLSLASLKLSQRVLISSSRDGAI
KVWK
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggacattttctccttgggatgtgttattgctgaactttttttggagggacaaccatta
ttcgagttatcccagctactggcatatcggcgagggcaatatgacccttgtcagtgccta
gaaaagatacaagatgaaggtgttcagaaaatgatacttcatatgattcagttaaatcca
aatgcaaggttatcaagtcaaagttacttgcaaaattatgcatcttcaatatttccaagc
tatttctcaccatcccttcacaaattcttctcttatttggttccgcttgattcagatgca
agggttgcagcaattgaaagagcattccataagattcatgcacaaatgatgagtgtcagg
tcatcagatgatgtcattcttgactcatctgcatctcccaaactcacagacgaagaaggt
tttcaaaatattaaaggtgtgactcaaagtatgcttttggctagaggggatgcaagaagc
agatcaaggaagagtacaattccaggccaggttcagcttgttggagatatcacttcactc
ttgagggatgtagaacaaataaatcattctgtgcacagtgatgtaacacagaagaatgct
acaatcttgtctactaatgattctgatactgactgcactagattttctaagcaatcaagg
accttgaagaatcagccatcaaatgatctccaagggcacaagcagaaagattttctattt
ctaagaaacatctttaaaggtgagctggactctttgatggatgcttatgatagccagaca
gatacataccgcatgccatcttttccacggtcaggtgacaaaaacagttgcgatggcatg
gtcctgattgcatcattagtatgttcttgcataagaagtgtgaaacagccacaactcaga
agggctggtctcctcctactgaagaccacttccttgtacactgatgatgaagatcgtcta
caacatgtccttccatatgttattgcaatgctttctgatccagctgctattgttcgctgt
gctgctcttgaaacattgtgtgacattttaactcttgtccaagatttccctcctagtgat
gcaatgatttttcctgagtatatatttccaatgctttccatgcttcctgatgatccagag
gagagtgttagaatttgttatgctagtaatatttctaagattgcattgtcttcttataga
tttttaattcaggctgagactatagctggtggagggcctctaggtaaaccaactatagca
caaaaatcacaacctcttattatggaatcaccaagtaagcaacgaggctacagaattgac
agtcagcttatgcaattaaggagattgttagctgaaattgtgcaagagctggtaatgggt
ccaaaacaaactccaaatgtccgtcgagctcttatgcaggatattggccacctatgttac
ttcttcggtcagaagcatagtaatgatttcctattgcccattcttccagcatttctcaat
gatcgagatgagcagcttcaatcagctttctataaacatataatttttttctgctatttt
gttggccaagtgagtgttgaggaatatcttttaccatacattgagcaggctttaagtgat
gaaatggaggttgtaattgtgaatggtttggattgtttgtccatattatgcaaaagtggt
ttcctacgaaaaaggacgcttcttgggttgattgagaaagttttccctttgttatgttat
ccaatctattgggttagaagatcagccgttactttcattgctgctagtagcaagagtttg
gggccggtagattcccatgtttatctttctccagtcttactcccttttttagacagggtg
ccaacttctttatcttctgaaacatctctactttcatgcctgaagcctccagtctctaaa
gtaatataccatcaagttctggaaaatgcaaggagttctgacatgttggaaagacaaaga
aggatatggtataattcatcaacatattcaaatcagttggaaactattgaacacactagg
aaggtttcaggagaagtgaaatccaataatatttcttgcaaaagagaatcagatttacaa
agtggaaaatatgccaacagtacaacactgaatgcatctttacctgttgtcgaggatgtt
gctgtaagaacagggacatcttttcagatctctggctcaatggatataagagattctgtt
tatttggaaaaaacacaattttctgcattcacatctccgcaggtaacagcagctaatact
tctctttgtgatgtgcctactgacggcattcccttgtactatgttagtctcaataaactt
gcatctggtattggtcctgaatcttcatgtcagtggaaccctaaaggtgtcgctgcttca
agcatgcggttggaacctctcgacaagccatttggcttatctaattcagttccacccaaa
ctggtttcaagctcttttttaaatatcagcaccaacatcaaacaagttcaaaagcaagct
gatgttgtatcccgggactctgagcaatctgcatttcttaccagtaagtttcaggatata
actgtttacgatgctttgaagggaagctcattgaatgatgcctcacagtccgagttaagt
ggattatctacctttgcaagagcatcttcggttcctgatataggatggaaaccacgtgga
gttctggttgcacatctccaggagcacaaatcttctgtgaatgatgtaactgtatcaaat
gaccacacttttttcgtaagtgcatctgatgattcgactgttaagatatgggatactagg
aaattggaaaaggacatctcttttaggtctaggttaacatattctctagatggttgtcga
gctttatgtacagctatgcttcggggcactgcccaagtggttgttggcgcaagcgatgga
acgattcatttattttctgtaaattacataagtagagggttcggtaatgtaatagaaaag
tattctggtattgctgatatccagaacagaaaaattggtgaaggtgcgattcttagtgtg
ttgaactgctctagtatagatagtagcattagtcagactgttttattcaccacccagaga
tgtggagttcatctctgggatacaagggcaaattctgatgcctggacatttaaagctgtt
ccagatgaaggatatgtctcatctcttgtaatgggtcaatgtggaaactggtttgtatct
ggttcttctagaggtgttctgacactctgggatctcaggttccttctgccagtgaactca
tggcaatatcccatgggttgccctgtggagaagctatgcttactaattccaccattgaac
tcagtgtctgctatgacaaggccattagtttatgttgctgctggaagtaatgaagtctcc
ctctggaatgctgagaacggaagttgtcatcaggtgttgagagtagcaagtggtgagcac
gaaggtgaatcaacccatttttctctagcgacagagaggccttctagaaagcaaagttct
caatttgatgggaaaagaaatatcaattccaaatataggattgatgagttgaatgaacca
gcccctcgtcttcagggtattcgatcattgcttccattacctgggggagatctgttgact
ggatgtgcagatttgacaatacgttactgggatcatacaagtcctgagcatagttattgt
gtctgtggtccattgacaaaaggcgtaggaaatgatgggtactatgatattaggtctaga
tttggtgtgcaaattgtgcagcaggagatgaacaagcggtcgactaagttgactcagaag
acattcctttccacggcagccactgattctgctgggtgtcaccgtgactctgtgctttcg
ttagcatctctcaagttgagccaaagggttttgatctcaagtagcagagatggtgcaatc
aaggtatggaaatag
DBGET
integrated database retrieval system
