Zingiber officinale (ginger): 122056010
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Entry
122056010 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122056010
09122 Translation
03013 Nucleocytoplasmic transport
122056010
03015 mRNA surveillance pathway
122056010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122056010
03041 Spliceosome [BR:
zof03041
]
122056010
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122056010
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122056010
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122056010
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122056010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
122056010
NCBI-ProteinID:
XP_042473677
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All DBs
Position
3B:17833646..17839024
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVKDNDAYEEELLDYEEEEEKAPDSVAAKVSGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVVGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKIAVFYGGVHIMKHKDILKNDCPHIVVGTPGRVLA
LARDKDLNLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTKYKNFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagtcaaggataacgatgcttacgaggaggagctcctggactacgaagaggag
gaagagaaggcccctgactcggttgctgcgaaggtctctggtgaagcggtgaagaagggc
tatgttgggattcacagttccggattcagagacttcctgttgaagccagaactccttcgt
gccatcgtcgattgtggttttgagcatccttctgaagtacaacatgaatgtattcctcaa
gctattctgggaatggatgttatttgccaagcaaagtctggaatgggcaaaactgctgtt
tttgttctttctactcttcagcaaattgagcctgttgtaggccaagttgctgcacttgtg
ctgtgccatacaagagaattggcctaccagatttgccatgagtttgagcgattcagcaca
tacttaccggacatcaaaattgctgtattctatggtggagttcacatcatgaagcacaag
gacatactaaagaatgactgcccacatatagtcgtaggcacaccaggaagagtgttggcg
ctagcaagagataaggatcttaatttgaagaatgtgaggcatttcattcttgatgaatgt
gataagatgctggagtcacttgacatgcggcgggatgtccaggaaattttcaaaatgaca
ccacacgacaaacaagtcatgatgttttcggcaactctcagcaaggagattcgccctgtg
tgcaagagattcatgcaagatcctatggaaatatatgtagacgatgaggccaagctgaca
cttcatggacttgtacagcactacatcaaactgactgaattggaaaagaaccgaaaacta
aatgatcttttggatgcactagacttcaatcaagttgtgatttttgtgaaaagcgtgagc
cgagcggcagagttgaacaagttgcttgtagaatgcaattttccatccatctgcatacac
tctggcatgtcacaggaagaaaggttaacaaagtataagaactttaaggaagggctcaaa
agaattcttgttgctacagatctggttgggaggggaattgatattgagcgtgttaacatt
gtgattaattatgatatgccagactctgctgacacatacctgcaccgggttggaagggct
ggccggttcggaaccaaagggctcgctattacatttgtctcatcagcagctgattctgat
gttcttaatcaggtgcaagagaggtttgaggtggacataaaggagttgcctgagcagata
gacacttcgacatacatgccttcgtaa
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