KEGG   Zingiber officinale (ginger): 122056635
Entry
122056635         CDS       T08725                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH-like isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122056635
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    122056635
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:zof01009]
    122056635
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    122056635
   03036 Chromosome and associated proteins [BR:zof03036]
    122056635
Protein phosphatases and associated proteins [BR:zof01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     122056635
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     122056635
    SWI/SNF complex
     122056635
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    122056635
   PBAF complex
    122056635
   SWI/SNF complex
    122056635
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 122056635
NCBI-ProteinID: XP_042474614
LinkDB
Position
3B:79550564..79555468
AA seq 258 aa
MRFFTPGAAKASIKFRMPTAENLVPIRLDIDVDGNRFKDAFTWNPSDPDSEVTNFAKRTV
KDLKLPSTFVAHISQSIQNQLSEFHSFEGQEMQIKEKIVPIKIDLRVNNTVIRDQFLWDI
SNLESDPEEFARTFCKDMDIGDPEVGPAIAVSIREQLYEIVTQSVSSARETRIGKKGRRA
SDTLTNSKAGITMDLGKLFGSKGSVVRKRKEWYLYEPIVDILSNEEVGALDAREELNARL
KRKLDEKDESFQTRYSHG
NT seq 777 nt   +upstreamnt  +downstreamnt
atgagattcttcacgccaggcgctgcgaaagcctccatcaaattcaggatgccaacagcg
gagaatcttgtgcccatccggttggatattgatgtcgatgggaatcgcttcaaggatgcc
ttcacctggaatcccagtgatcctgattcagaagtgaccaattttgctaaaaggactgtg
aaggatctcaaattaccatcaacatttgtggcgcatatttctcaatccattcaaaaccaa
ttgtcagaattccattcatttgaaggtcaagaaatgcaaatcaaggagaaaattgtgcct
atcaagattgatctacgtgttaacaacaccgtaataagagatcagttcttgtgggacatt
agcaacttagaaagtgatcctgaagagtttgcgcgaactttctgcaaagacatggatatt
ggagacccggaagttggaccagcaattgcagtttcgataagggagcagctttatgagatt
gtaactcaatcagtttcttcagccagagagaccagaatagggaaaaagggccgacgagca
tcagatactctcacaaacagtaaagcgggcatcactatggacttagggaagctatttggc
agtaaaggaagtgttgttcgaaaaaggaaagaatggtatttatatgaacccattgtcgac
attttgtcaaacgaggaggtcggggctcttgatgcaagggaagaactaaatgcgcgtttg
aagagaaagttggatgaaaaagacgagagctttcagacgcgctattctcatggttga

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