Zingiber officinale (ginger): 122056695
Help
Entry
122056695 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122056695
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122056695
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122056695
03036 Chromosome and associated proteins [BR:
zof03036
]
122056695
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122056695
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122056695
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122056695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
122056695
NCBI-ProteinID:
XP_042474701
LinkDB
All DBs
Position
3B:complement(85628701..85640470)
Genome browser
AA seq
514 aa
AA seq
DB search
MNGHSGEKGGPAASSSSVTPTLDWKFSQVFGERLSGEEVQEVDIISAIEFDKTGDHLATG
DRGGRVVLFERTDTRNLGSRKDLEAQDYQISRHAEFRYKTEFQSHEPEFDYLKSLEIEEK
INEIGWCQTANGALSLLSTNDKTIKYWKVQEKKVKQIAEMSLDASRVVGNGCSGSSTTNS
PTPSLSNGCSGSTYLSNDLSFPPGGFPSLRLPVVVTSHEKSLVARCRRIYAHAHDYHINS
ISTNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITCAEFHPVHCNML
AYSSSKGSIRLIDLRQSALCDNHSMLFENHEAPGSRSFFTEIIASISDIKFANDGRHILS
RDYMTLKLWDINMDSAPVATFDVHEYLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSY
SNLFRVFGCVPGSNESTTLEASKNPMRKQAQNPTRASRSLCSLTRVVRRGAEIPSVDANG
NSFDPAIKLLHLAWHPTENLIACAAANSLYMYYA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggcacagtggcgagaaaggtgggccggcggcgtcatcgtcgtccgtgacgccg
actctggattggaagttctcgcaggtctttggggagcgcctatcgggggaggaggtccag
gaagtggatatcatctcagcaatagaatttgataaaactggagaccatcttgcaactgga
gatagaggaggccgtgttgttttgtttgagaggacagatactagaaatcttggctctcgg
aaggatctagaggcacaggattatcagattagtaggcatgctgagtttcgctacaaaact
gagtttcaaagccatgaaccagagtttgactatctcaaaagcttggaaatagaggagaag
attaatgaaatcggatggtgtcaaacagctaatggtgctctatcacttctctcaactaat
gataaaacaattaaatactggaaggtacaagaaaagaaggtcaaacaaattgctgagatg
agcttagatgcttcaagggttgtcggaaatggctgcagtggtagctcaactactaatagt
cctactccatctctttctaatggatgctccggaagcacctatctgagcaatgacttatcc
ttccctcctggagggtttccttcactacgtttgccagtggtagtgactagccatgagaag
agccttgttgcgagatgtcgaagaatatatgctcatgctcatgattaccacataaactct
atttcaactaacagtgatggtgagacatttatatcagcagatgatcttcgaataaatttg
tggaatttggaaattagcagtcagagctttaatattgttgatgtcaaacctgcaaatatg
gaagatttaacagaggttataacttgtgctgaattccacccagtccattgtaatatgtta
gcatatagtagctcaaagggatctatccggcttatagatttgcgtcaatcagcattatgt
gataaccattctatgctgtttgagaatcatgaggcacctggttcaagatcatttttcact
gagatcattgcctctatttcggatatcaaatttgcaaacgatggaagacacatcctaagt
cgtgattatatgaccctcaagctttgggatataaacatggattcagctccagtcgcaacc
tttgacgttcatgagtacttgaggcctaggttgtgtgatctatacgagaatgattccatc
tttgacaaatttgaatgctgtcttagtggagatgggttgcgtgtggcaactggttcttac
agtaacctttttcgtgtatttggctgtgttcctggaagcaacgaatcaacaactttagaa
gccagtaaaaatccaatgaggaaacaagcgcaaaaccctacaagagcttccagatctctt
tgcagtttgacacgcgtcgtccgacgaggagcagaaatccccagtgtcgacgccaatggg
aactcattcgatcccgcaatcaaattgcttcacttggcatggcacccaactgaaaatttg
atagcctgtgccgctgcaaacagcttgtacatgtactacgcataa
DBGET
integrated database retrieval system
