KEGG   Zobellella sp. An-6: ACT7DK_01625
Entry
ACT7DK_01625      CDS       T11875                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
zon  Zobellella sp. An-6
Pathway
zon03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zon00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACT7DK_01625 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zon03021]
    ACT7DK_01625 (rho)
   03019 Messenger RNA biogenesis [BR:zon03019]
    ACT7DK_01625 (rho)
Transcription machinery [BR:zon03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACT7DK_01625 (rho)
Messenger RNA biogenesis [BR:zon03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACT7DK_01625 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 AAA Mor
Other DBs
NCBI-ProteinID: YAB05842
LinkDB
Position
350920..352185
AA seq 421 aa
MNLTELKNTPVSELIKLGEDMGLENLARLRKQDIIFAILKAHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKIGEVN
YDRPENSRNKILFENLTPLHANERMKMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSITYNHPECTLIVLLIDERPEEVTEMQRMVKGEVIASTFDEPAARHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMELHLSRKIAEKRVYPAIDI
TRSGTRREELLTTPDELQKMWILRKIVHPMGEIDGIEFLIDKLAMTKTNDEFFEAMKRQQ
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttactgaactcaagaatacccctgtatctgagctgataaagcttggggaagac
atggggctggaaaacctcgcccggctgcgcaagcaggacatcatctttgccatcctcaag
gcccatgccaaaagtggtgaggacatctacggcgacggcgtgctggaaatcctgcaggac
ggcttcggctttttgcgcagcgccgattcttcctacctggccggtcccgacgatatctat
gtttctcccagccagatccgtcgcttcaacctgcgcaccggcgacaccatctccggcaag
atccggccgccgaaggaaggagaacgctatttcgccctgctcaagattggtgaagtcaac
tacgacaggcccgaaaactcccgcaacaagatcctgttcgaaaacctgactcccctgcat
gccaatgagcgcatgaagatggagcggggcaacggctccaccgaagacatcaccgcccgg
gtactggatctggcctctcccatcggcaagggccagcggggcctgatagtggcgccgccc
aaggccggtaagaccatgctgctgcagaacatcgcccagagcatcacctacaaccacccg
gagtgtaccctgatcgtgctgctgatcgacgagcggccggaagaggtgaccgagatgcag
cggatggtgaagggcgaagtgatcgcttccaccttcgacgagccggcggcccgtcacgtg
caggtagccgacatggtgatcgaaaaggccaaacgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgcctggcccgggcctacaacactgtggtgccttcc
tccggcaaggtgttgaccggcggcgtggacgccaacgccctgcaccgacccaagcgcttc
ttcggcgccgcccgtaacgtagaggaaggcggcagcctgaccatcatcgccaccgccctg
gtggaaaccggctccaagatggacgacgtcatctacgaggagttcaagggcaccggcaac
atggagctgcacctgtcgcgcaagatcgccgagaagcgggtctatccggccatcgacatc
acccgttcaggtacccgccgggaagagctgctcaccactccggacgagctgcagaagatg
tggatactgcgcaagatcgtgcatcccatgggcgagatcgatggcatcgagttcctcatc
gacaagctggccatgaccaagaccaacgacgagttcttcgaagccatgaaacggcagcag
aagtaa

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