Zoogloeaceae bacteirum Par-f-2: C3497_01830
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Entry
C3497_01830 CDS
T05440
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
zpa
Zoogloeaceae bacteirum Par-f-2
Pathway
zpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3497_01830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zpa03021
]
C3497_01830 (rpoC)
03400 DNA repair and recombination proteins [BR:
zpa03400
]
C3497_01830 (rpoC)
Enzymes [BR:
zpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3497_01830 (rpoC)
Transcription machinery [BR:
zpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3497_01830 (rpoC)
DNA repair and recombination proteins [BR:
zpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3497_01830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AVZ78341
LinkDB
All DBs
Position
391325..395539
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLADLFKQTLPNEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVIEPGMTPLSRGQLLTEDDYLAKVEEYGDDFDA
VMGAEGIRELLRTLDINLEIEKLRGELESTGSEAKIKKFSKRLKVLEAFQQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVENQEPVVWDILEEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREAVNAKGEGMLLADVAEVKRAYE
SGQLSLHARISVRLKEVEVTPDGEQREKVTRYETTAGRAILSEILPSGLPFSVIDKPLKK
KEISRLINASFRRCGLRATVIFADKLMQFGYALATRAGISIAIKDMLVPKLKDELIRAAE
AEVKEIAQQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMEQLGHEPVIDRNGKETKQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTRDGFYMKALIEGGEVVEPLRER
ILGRVCAEDVVNPDTQETVIEAGTLLDEDLVDLVERLGIDEVKVRTPLTCETRYGLCAKC
YGRDLGRGQMVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVEAKSTGTI
RFAGNMRYVANAKGEKIVIARSAELVVADEMGRERERHKLPYGATLLVDDGTAIKAGTQL
ASWDPHTRPIITEYAGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDAKRRSTSATAKGVR
PQVKLLDENGEEIKIAGTEHAVAITFQVGSLITVKDGQQVNVGDVLARIPQESAKTRDIT
GGLPRVAELFEARSPKDAGLLAEYTGTVSFGKDTKGKQRLVITEPDGQAHEFLIPKDKHL
MVHDGQVVNKGELIVDGPADPHDILRLQGIEALAHYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDPGDTKFIREEQVERSEVLDENDRMIAEGKLPAQFENLLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRNRRAQNSGE
DLGGAHAWPAVETAAAQSQDVEAS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcttgctcgctgacctgttcaagcaaaccctgccgaacgaggaagagttcgac
gcgatcacgatcggtctggcctctccggacaagatccgctcgtggtcttacggggaagtc
aaaaaacccgagaccatcaactaccgtaccttcaaaccggagcgcgacggcctgttctgc
gccaagatcttcggcccggtgaaggattacgagtgcctgtgcggcaaatacaagcgtctc
aagcaccgcggcgtgatttgtgaaaaatgcggtgtcgaagtgaccttgtccaaagtgcgc
cgcgaacggatgggccacatcgagctggcctcgccggtggcgcacatttggttcctgaag
agcctgccgagccgtctcggcatggtgctcgatatgacgctgcgcgacatcgaacgcgtg
ctctatttcgaagccttcgtggtgattgagccgggcatgacgccactgagtcggggccaa
ctgctcaccgaagacgattatctggccaaggtcgaagaatacggtgatgacttcgatgcg
gtgatgggggccgaaggcatccgtgagctgctgcgcacgctggacatcaatctcgagatc
gagaagctgcgcggcgaactggaaagcaccggctccgaagccaaaatcaagaagttctcc
aaacgcctgaaagtactcgaagccttccagcaatccgggatcaagcccgaatggatgatc
ctggaagtgctgccggtgttgccgccggacctgcgtccgctggtgccgctggatggcggc
cgtttcgccacctcggatctgaacgacctctatcgtcgggtcatcaaccgcaacaaccgc
ctcaagcgtctgctggagctcaaggcgcccgagatcatcgtgcgtaacgaaaagcgcatg
ctgcaagaagcggtcgattcgctgctcgacaacggccgccgcggcaaggccatgaccggc
gccaacaagcgtccgctgaagtcgctggccgacatgatcaagggcaaaggtggccgcttc
cgtcaaaacctgttgggtaagcgcgtcgactactccggccgttccgtgatcgtggtcggg
ccgcaactcaagctgcaccaatgcggtctgcccaagctgatggcgctggagctgttcaag
ccctttatcttcaataagctcgaactgatggggctggcgaccaccatcaagcaagccaag
aaaatggtggaaaaccaggagccggtggtgtgggacatcctcgaagaggtgatccgcgag
cacccggtgttgctcaaccgtgcgccgaccctgcaccgcctgggtattcaggcgttcgaa
ccggtgttgatcgaaggcaaggcgatccaactccacccgctggtttgcgtggccttcaac
gccgacttcgacggcgaccagatggccgtccacgtgcccctgtcgctggaagcgcaaatg
gaggcccgcactttgatgctggcctccaacaacgtgctctcgccggccaacggcgagccg
atcatcgtgccgtcgcaagacatcgtgctggggctgtattacgctacccgcgaggcggtc
aatgccaagggcgaaggcatgttgttggccgatgtcgcggaagtcaaacgcgcctacgaa
tcgggtcagctttcgctgcatgcccgcatctcggtgcgtctgaaggaagtcgaagtgacc
ccggacggcgagcagcgtgaaaaggtcacccgctatgagaccactgccgggcgcgccatt
ctgtccgagattctgccgtcgggactgcctttcagcgtcatcgacaagccgctgaagaaa
aaagaaatctcccgcctgatcaacgcctcgttccgccgttgcggtctgcgcgcgacggtg
atttttgccgacaaactgatgcagttcggctacgcgctggccacccgcgcggggatttcc
atcgccatcaaggacatgctcgtgcccaagctcaaggacgagctgatccgtgcggcggaa
gccgaagtgaaggagatcgcccagcaatacacgtctggcttggtgaccgacggcgagcgc
tacaacaaagtggtcgacatctgggggcgttgcggtgaccaggtggccaaagcgatgatg
gaacagcttggccacgagccggtgatcgatcgcaatggcaaggaaaccaagcaggagtcg
ttcaactcgatctatatgatggccgactccggcgcgcgcggctctgccgcccagatccgg
cagttggccggtatgcgcggtctgatggccaagccggacggctcgatcatcgagaccccg
atcaccaccaacttccgcgaagggttgaacgttctgcagtacttcatctcgacgcacggc
gcccgcaaaggtctggccgataccgcgctgaagaccgccaactccggttatctgacccgt
cgtttggtcgatgtgacccaagatctggtggtgaccgaagaagattgcggcacccgcgat
gggttctacatgaaggccctgatcgaaggcggcgaagtggtcgaaccgctgcgcgagcgt
attcttggccgggtatgtgccgaagacgtggtcaacccggatacgcaagagacggtcatc
gaagccggcacgctgctcgacgaagatctggtcgacctggtcgagcggctgggcatcgat
gaggtgaaggtgcgcactccgctgacctgcgagacccgctacggactgtgcgccaagtgc
tacggccgcgacttgggccgcggacaaatggtcaacgttggcgaagcggtgggtgtgatt
gccgcgcagtcgatcggcgagccgggtacccagctcaccatgcggaccttccacgtcggc
ggcgcggcctcccgggctgcggcggccagtggagtggaagccaagtccaccggtacgatc
cgctttgccggcaacatgcgctatgtggccaatgccaagggcgagaaaatcgtcatcgcg
cgttcggccgagttggtggtggccgacgaaatgggccgtgagcgcgaacgccacaaacta
ccttacggcgccacgttgctggtcgacgatggcacggcgatcaaggccggcacgcagttg
gcgagctgggatccgcacacccgcccgatcattactgagtacgccgggacggtgaagttc
gaaaatgtcgaagaaggcgtcaccgtcgccaagcagatcgacgaagtcaccgggttgtcc
accctggtggtgatcgacgccaagcggcgttcgacctcggctaccgccaaaggcgtgcgc
ccgcaagtcaaactgctcgacgagaacggcgaggaaatcaagatcgccggcaccgagcat
gcggtggcgattaccttccaggtcggctcgctgatcacggtcaaagatggacagcaggtg
aatgtgggcgacgtgctcgcccgtattccgcaagaatctgccaaaacccgcgacattacc
ggtggtctgccgcgtgtggccgagttgttcgaggcgcgttcgcccaaggacgccggtttg
ctggccgaatacaccggcacggtgtcgttcggtaaagacaccaagggcaaacagcgtctg
gtgatcaccgagccggacggtcaggcgcacgagttcctgatcccgaaggacaagcacctg
atggtgcacgacggccaggtggtcaacaaaggcgagctgatcgtcgacggtccggccgac
ccacacgatattctgcgtctgcagggtatcgaggcgctggcccactacatcatcgacgaa
gtgcaggacgtctatcgcctacagggtgtaaagatcaacgacaagcatatcgaggtcatc
gttcgccagatgctgcgtcgcgtggtcattaccgacccgggcgacaccaagttcatccgt
gaagaacaggtcgaacgctcagaagtgctcgacgagaacgatcgcatgatcgccgagggc
aaactgccggcgcagttcgagaacctgttgttgggtattaccaaggcgtcgctgtcgacc
gactcgttcatctccgcggcgtcgttccaggaaaccacccgtgtgttgaccgaagcggcg
atcatgggcaagcgcgacgaactacgcggcctgaaggaaaacgtcatcgtcggtcgcctg
attccggccggtaccggtctggcgtatcaccgcaaccgtcgggcgcagaatagcggagag
gacctgggaggcgcgcacgcctggcctgcggtcgagacggctgcagcacaaagtcaggac
gtggaagctagttga
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