Zymobacter palmae: ZBT109_0656
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Entry
ZBT109_0656 CDS
T05646
Name
(GenBank) HrpA-like helicases
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
zpl
Zymobacter palmae
Brite
KEGG Orthology (KO) [BR:
zpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zpl03019
]
ZBT109_0656
Enzymes [BR:
zpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ZBT109_0656
Messenger RNA biogenesis [BR:
zpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ZBT109_0656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
nSTAND3
AAA_19
SRP54
NACHT
nSTAND_NTPase5
ABC_tran
T2SSE
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
BBG29434
UniProt:
A0A348HCT2
LinkDB
All DBs
Position
698813..702796
Genome browser
AA seq
1327 aa
AA seq
DB search
MSDSPSVPHHSDAADAQLARLQQCCDQLPLREAADVRKRLSALRRRVKQGQPVDRSLAAL
QAQCDASLQQLEARLSRPITLQYPPELPVSARHDEILKLLEAHQVVVIAGETGSGKTTQI
PKLCLEAGSGRRGLIGHTQPRRLAARNVAARLAEELQVPLGETVGFQMRFADNTNEHTRI
KLMTDGILLAEIQHDPQLLRYDTLIIDEAHERSLNIDFLLGYLRQLIQRRHDLKIVITSA
TIDVERFAEHFADPRTGKPAPIIEVSGRTYPVETRYRPLMRDSAEESDLTLQEGILEAVE
EIAHIEREKRWFTGPRDILVFLPGEREIRETAETLRKAQLRDTEILPLYARLSVSEQQRI
FTPSVGRRIVLATNVAETSLTVPGIRYVIDPGLARISRYSPRAKVQRLPIEPISQASAEQ
RKGRCGRISEGACIRLYSEDDFILRPAFTEPEIRRTNLAAVILSMLALRLGNIEAFPFLE
PPESRAVRDGFRLLNELGAVDSNDQLTPLGRKLARLPIDPRLARMVLAGAEFKALQEVLI
VVSALAVQDPRERPADQREAADQKHREWADKDSDFVSWLNLWNGFATARDDLSSSALRRW
CRTHFLSYMRLREWHDTFRQLRQLAQELKLGEVHPRLARDEEGKLAIEVDGMHRALLTGL
LSNLGLHLENREYLGARNRRFMIHPGSGLSKRTPKWIMAAEMLETTRLYAREVSGIKPQW
IEPTAGELVKRSYSEPHWEKKRAQVVAYEQVTLFGLPIVTQRKVHYGPIAPQESREIFIR
SALVEGEFRTQGKFFAHNRALIGEVEALEDKARRRDILVDEDTLFAFYDERIPDNITNGA
SFERWRKDVEHKAPEALFFDLDALMAREAEEVTDQRYPERLMVADMQLPLSYHFAPGASD
DGVTVSVPAVMLSTLPREALDWLVPGLRRDKGIALMKSLPKALRRQVVPIPDWVDAALEA
LTPGQTYMTEALGEFLRRRTGVRLSDEDWQVEQLPPHLIMNIRVLDHKGKVLGEGRDLDA
LIARFERQAEEGAAALADSRQPRTGLTAWPSQRLPERERREQAGIRVEAYPALVDEGDSL
GVVLFDHPGKAHEQHRHGVKRAAMQALPEQVRYFTKSMPKLDRCALLFTKVGSRQALASD
IVDALFLRAFAFDPLPRSADEMAERIEARRGDLGELADMLADEVEAALKGYLDVTKKLKG
NVSLQLARAYSDLKAQMARLVHPGFVVDAGEWLSHYPRYMQAALLRLEKLGRDYRRDTVA
MQEIHDFEARWDARRQSVKGALDPALAEFRWWIEELRVSLFAQQLGTLDTVSVKRLERRW
QEIIAGE
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgattctccttctgtgccccatcattctgacgcggccgacgcgcagctggctcgg
ttgcagcagtgctgcgatcagcttcctctgcgtgaagcggccgatgtgcgcaagcgcctt
tccgcactgcggcgacgcgttaagcaaggtcagcctgtcgaccgctcgctggcggcgctg
caggcgcagtgcgatgccagtcttcaacagctggaggcgcggctgtctcggcccatcact
ttgcagtatccgccagaactgcccgtatccgcgcgccacgatgaaatactgaagcttctg
gaagcgcatcaggttgtcgtgatcgcgggggaaaccggttcggggaaaacaactcagatt
cccaagttgtgtttggaagcgggcagcggtcgtcgtgggctgattggtcatacccagccg
cggcgtcttgcagcgcgtaatgtggccgcacgtttggccgaagagctgcaggtgccgctg
ggtgaaacggtcggctttcagatgcgctttgccgacaataccaatgagcacacgcgcatc
aagctgatgaccgacggtattctgttggccgaaattcagcatgatcctcagctgctacgt
tatgacacccttatcatcgatgaagcgcacgagcgcagccttaacatcgactttctgctg
ggctatctgcgccagctgattcagcgtcgccatgatctcaagatcgtcatcacctcggcg
accatcgacgtcgaacgcttcgccgaacattttgctgatccgcgtacgggcaagcctgca
ccgatcatcgaggtatccgggcgtacttacccggtcgagacgcgttatcgtccgctgatg
cgcgacagtgctgaagaaagcgacctgacgctgcaggaaggcatccttgaagctgtcgaa
gagattgcgcatatcgagcgtgaaaagcgctggtttacggggccgcgtgacattctggtc
tttctgccgggcgagcgtgaaatacgcgagacagcagaaacgctgcgcaaggcacaacta
cgtgatactgagattctgccgctgtatgcgcgcctgtcggtcagcgagcagcaacgcatt
ttcacgccgtccgttgggcgacgcatcgtgttagccactaacgtggcggaaacctcgctg
accgtaccgggtattcgctatgtaattgaccccgggcttgcacgcatcagtcgctatagc
ccgcgggccaaggtacagcggctgccgatcgaaccgatcagtcaggccagtgcggagcag
cgcaaggggcgctgtggtcgtatcagcgaaggggcatgcattcgtctctacagtgaagat
gatttcatcctgcgaccggcctttaccgaaccggagattagacggaccaacctggcggcg
gtcattctgtcgatgctggccctgcgtctgggcaatattgaagccttcccctttctggag
ccgcccgaaagccgtgcggtgcgcgatggcttccggctgctgaacgagctgggggcggtc
gacagcaacgatcagttgacgccgctggggcgcaagttggcgcgtctgcccattgacccg
cgcctagcgcgcatggtgttggcgggggccgaattcaaagcgttgcaggaagtgctgatc
gtcgtcagtgcgctggcggtgcaagaccctcgcgagcgcccggcagatcagcgtgaggcg
gcggatcagaagcaccgtgagtgggccgataaggactccgatttcgtcagctggctcaac
ctgtggaatggcttcgcgaccgcgcgcgatgatctgtcatcgagtgcgctgcgacgctgg
tgtcgtacacacttcttgagctacatgcgtttgcgcgagtggcacgataccttccgtcag
ctgcgtcagctagcacaggaactgaagctgggcgaggtgcatccgcgtctggcgcgcgac
gaagagggcaagctggcgatcgaagtcgatggcatgcaccgcgcgctgctgacagggcta
ctgtccaaccttgggttgcaccttgagaaccgcgaatacttaggggcgcgcaaccgtcgt
ttcatgattcaccccggttcggggctgtccaagcgaacgccgaagtggatcatggccgct
gaaatgctggaaaccacccgcttatatgcgcgtgaagtctcgggtatcaagccgcaatgg
atcgagccgacggccggtgagctggtcaagcgcagctatagcgaaccgcattgggagaag
aagcgcgcacaggtcgtggcctatgaacaggttacgctgttcgggctgcccatcgtgacc
cagcgcaaggtgcactatggcccgatcgcaccgcaggaatcgcgtgaaatcttcatccgc
agcgcgcttgtcgaaggcgagtttcgcactcagggcaagtttttcgcccataaccgcgct
ctgattggggaagtggaggcgttggaagataaggcgcgccgccgcgacattctggtcgat
gaagacacgctgttcgcgttttatgacgaacgcattcccgacaacatcacgaacggtgcc
agcttcgagcgctggcgcaaggatgtcgaacacaaagcaccggaagcactgttctttgat
ttggatgcgctgatggcgcgtgaagccgaagaagttaccgatcagcgctaccccgagcga
ctgatggtagccgacatgcagcttccgctgtcctatcactttgcccctggcgcttcagac
gatggagtgacggtgtcggtgccggcggtgatgctcagtaccctgccgcgtgaggcgctc
gactggctggtgccggggctgcggcgcgacaagggcattgcgctgatgaagtcactgccc
aaggcgctgcgccgtcaggtcgtgccgatccccgactgggtcgatgcggcgctggaagcg
ctgacgccggggcagacctacatgaccgaggcgctgggcgagttcctgcgccgccgtacc
ggcgtgcggttgtcagatgaggattggcaggtcgaacagctaccgcctcatttgatcatg
aacatccgtgtactggatcacaaagggaaagtgctcggcgaggggcgtgatctggatgcg
ctgatcgcgcgtttcgagcgacaggcagaagaaggcgcagcggcactggccgatagccgc
cagccgcgcacggggctgactgcatggccttcacagcgtctgcccgaacgcgagcgccgc
gaacaagcgggcatccgcgttgaagcctatcccgcactggttgacgaaggcgatagcctc
ggggtcgtactattcgaccacccgggcaaggctcacgagcagcatcgacatggggtgaaa
cgcgccgccatgcaggcgctgccggagcaggtacgctattttacgaagtcgatgccgaaa
ctggatcgttgtgcgctgcttttcaccaaagtcggatcacgtcaggcgctggcatccgat
atcgtagatgccctgtttctacgggcgttcgctttcgatccactgccccgcagtgcggac
gaaatggccgaacgtatcgaagcgcgccgcggtgatctgggcgaactggccgatatgctg
gccgatgaggtcgaagctgctttgaagggctatcttgacgtcaccaagaagctgaagggc
aacgttagccttcagctggcgcgggcctattccgatctgaaagcacagatggctcgattg
gttcacccaggatttgtcgtcgacgcaggggagtggctgagccactatcctcgctacatg
caggcggcactgcttcgccttgagaagctggggcgcgactatcggcgcgataccgttgca
atgcaggaaatccacgatttcgaagcgcgttgggatgcgcgacgacagagcgtcaagggt
gcccttgaccccgcactggccgaattccgctggtggattgaggaactgcgcgtctccctg
tttgcccagcagctgggcacactggacaccgtatcggtcaaacgtttggaacggcgctgg
caggaaatcattgccggagaataa
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integrated database retrieval system
