Zymobacter palmae: ZBT109_1013
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Entry
ZBT109_1013 CDS
T05646
Name
(GenBank) exonuclease V gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
zpl
Zymobacter palmae
Pathway
zpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ZBT109_1013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zpl03400
]
ZBT109_1013
Enzymes [BR:
zpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ZBT109_1013
DNA repair and recombination proteins [BR:
zpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ZBT109_1013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
NACHT_N
Motif
Other DBs
NCBI-ProteinID:
BBG29780
UniProt:
A0A348HDS8
LinkDB
All DBs
Position
1087779..1091285
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AA seq
1168 aa
AA seq
DB search
MFSVIHANHIEDLRDLALSLVEREPLSPLEDDVFLVQSKGMAQWLRICIAEREGVAASLA
FPLPSEFIWQAYRAVLGNTIPKRSPFDRKALVWRLMRLLPQLVDEPVYAPLATYLRRHEH
VSDTTSHQRLHQLAERLADLYDQYLLYRPDWMAAWAYERTEQTAIRLDDDQRWQPVLWRM
LLNDVTPEERTFHRAWVHRRFRERAAELTERPAGIPRRIFIFGISSLPWQILEALQAIAS
VTDIYLLVTNPCRFYWGDIVGEREALRRETRALARARHQPHPELESLAPDELHLRANPLL
AGWGAQGRDFIAALYEFETEQGFDIDHDIFLDWASGPDASLLQQLQQDILDMAHPRERLD
TGHGPRLLALDDTSVQFVSAHSPLREVEILRDQLLAAFEQDPTLKPRDIVVMVPEIDRYA
PLIDAVFGQYDRSDARWMPYSIADRRASRSHPLLVCALQLLDLPERRLTVSELLDWLDIP
AFRHRFGIDASALPRIARWVTGSGVRWGLNEAHRELLGLPALANNTWRFGLERMLLGYAV
GGESQAAGEAFADIEPYDEIQGLDAELVGRLMDVTDTLDRFAEQMAEPCPPTQWAERLAH
LYDAVFAPRTAEEFDIRQRLTRAVYDWLDQCDSARFDEPIALCIVRAALSDIIDDDGLAP
RFLGGSINFATLMPMRAIPFRYTWLLGMNDGDYPRTRPAQDFDLMAVYPQPGDRSRRDDD
RYLMLEALLATRTRLTCSWVGQDQRGGSPHSPSILISELRDAIAQGWRLPDDAEHPYDPD
TGEHVLDWLTQQHPLQPFSHRYLEGREPQLYTYDEHWAAALNVAHRPLLPKEAHTLPPAP
LADSQLSQDGLLRLLRSPSTLCLAARLSVHYREPEVDEEDAEPFTLDNLQVFDFKRRLLE
GARAGEPLETAVARMQRAGQLPLLGFGDALVRGMLPRLTVQLDRWRQVQQGLVTLERQVL
RWSWQDALGQTRWLEAVLEGLQQDEDGQLHCWQIAPAHYGDVFSRQGLPVLQKPHRLFEN
EVKALLASLATGRSVRPGWVFEDRVLRLPAITPLAAEQQLIEWLAVMEEGWQRPLPVDRS
LAFTYLDGSAPEQDTLAADDPLWQPCRDRYEEETFCGDQRRAPLRDQHPVLGELWPTFDD
LLADGFAPLSRRLYGPLVARLVDAEQHL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgttttcggttattcatgccaaccatatcgaggatttgcgcgatctggcgctgtcgctg
gtcgaacgcgagccgctttcaccgctggaagacgatgtctttctggtgcagtccaagggg
atggcgcagtggctgcgtatttgtatcgccgagcgggaaggcgttgcggcatcactggcc
tttccgctgccgtcggaattcatctggcaggcctatcgcgccgtgctgggaaacacgata
cctaaacgctcaccgttcgatcgcaaggcgctggtatggcggttaatgcgcctgctaccg
cagctggtcgacgagccggtatatgcaccgttggcgacctatctgcgtcgccatgagcat
gtcagcgacacgacttcgcatcagcgtcttcatcagctggccgaacgtctcgccgatctg
tacgaccagtatttgttgtaccgccccgactggatggcggcgtgggcatacgagcgtacc
gagcaaacggctattcgattggatgatgaccagcgctggcagccggtactgtggcgtatg
ctgctcaatgatgtcacgccggaagaacgtacctttcaccgcgcgtgggtgcatcgccgc
ttccgcgagcgggcagctgagctgaccgagcggccagcgggcattcctcgtcgtatcttc
atcttcggtatttccagcctgccatggcagattttggaggcattgcaggccatcgcttcg
gtgaccgatatctatctgttggtgacgaacccgtgccggttttactggggcgatattgtg
ggtgagcgtgaggcgctgcggcgcgagacccgggcgctggcgcgtgcgcgccatcagccg
catcctgagctggaatcgcttgcacccgacgagctgcacctgcgtgccaatccgctattg
gcagggtggggcgcacaggggcgcgatttcattgcggcactctatgagttcgaaactgag
cagggcttcgacattgatcacgatatcttcctagactgggcttccgggcctgatgcgtca
ctgttgcagcagcttcagcaggacattttggatatggcgcatccgcgtgagcgattggat
accggtcatggcccgcgtctgttggcactggatgatacctcggtgcagttcgtatcggca
cactcaccgctgcgtgaagtcgaaattctgcgagaccagctgctggcggcgttcgagcag
gatccaacgctgaaaccgcgtgatatcgtagtgatggtgccggagatcgaccgctatgcg
ccgctgatcgacgcggtgttcggtcagtacgaccgctccgatgcccgttggatgccttat
agcattgctgaccgcagagcctcgcggtctcaccctctactggtgtgtgccctacagttg
cttgatttgcctgaacggcggctgacggtcagtgagctgctggactggctggacattcct
gccttccgccatcgcttcggtatcgacgccagtgcgctgccgcgtatcgcgcgctgggtg
acgggcagcggtgtgcgttgggggttgaatgaagcccatcgcgagctgttgggacttccg
gcgctagccaacaacacctggcgtttcgggctggagcgaatgttgctgggttacgccgtg
ggcggtgaaagccaagccgcaggcgaggcctttgccgacattgagccgtacgatgagatt
caagggttggatgccgagctggtcgggcgtctgatggatgtgacggatacccttgaccgt
tttgccgagcagatggccgagccgtgcccgccgacccagtgggcagagcggctggcacac
ctttacgatgccgtgtttgcaccgcgcacagcagaagaattcgatatccgtcagcgccta
acgcgtgccgtgtacgattggttagatcagtgcgacagtgcgcgtttcgatgaaccgata
gcgctgtgcatcgtgcgcgccgcgctgagcgatatcattgacgacgacggtttagcacca
cgctttctgggcggtagcatcaacttcgctacgctgatgccgatgcgtgccatcccgttc
cgctacacctggttgctgggcatgaatgacggtgactatccacgtacgcgcccagcgcag
gacttcgatctgatggcggtctatccgcaaccgggtgaccgctcgcggcgcgatgatgac
cgctatttgatgctggaggcgttgctggcaacgcgtacacgtctgacctgttcgtgggtc
ggacaggatcagcgtgggggaagcccgcattcgccgtcgatcctgatcagcgaattgcgc
gatgcgatcgcgcagggctggcgtctgcccgatgatgccgaacatccttatgacccggat
acgggcgagcatgtgcttgattggctgactcagcagcacccacttcagccgttctcgcac
cgctatctggaaggccgcgaaccgcagctgtacacctatgacgagcactgggccgcggcg
ctgaacgtggcacatcggccgttgctgccgaaggaagcgcatacactgccacccgcaccg
ctggctgatagccagctatcacaggacgggctgctgcgcttgctgcgttcaccctccacg
ctgtgtctggcggcaaggctgagcgttcactaccgtgagccagaggtggatgaggaagac
gctgaacccttcacgctggacaatcttcaggtcttcgatttcaagcggcgtttgttggaa
ggggcgcgagcaggagagcctctcgaaacggcggtagccagaatgcagcgggcaggacaa
ctgccgctgctcgggttcggtgacgcgctggtgcgcggcatgctaccgcggctgaccgtg
cagcttgaccgctggcggcaggtacaacaagggttagtaacgctggagcgtcaggtgctg
cgctggtcatggcaggacgctcttgggcagacacgctggcttgaggcggtgttggaaggg
cttcagcaagatgaagacgggcagttgcactgctggcagatcgctcccgcccactatggc
gacgtattctcacgccaagggctgcccgtattgcagaaaccgcatcgcctgttcgagaac
gaggtgaaagcgctgctggccagcctagcgacagggcgatccgtgcgccccggctgggtg
ttcgaagaccgtgtgctgcgtttgccggcgattaccccgctggcggccgaacagcaactg
attgaatggcttgccgtgatggaagagggctggcagcggccgctgccggtggatcgctcg
ttggcgtttacctaccttgacggcagcgcacccgagcaggatacgctggcggcggacgac
ccactctggcagccgtgccgcgatcgctatgaagaagagaccttctgcggcgatcaacgc
cgcgcgccgctgcgcgaccagcatccggtgctaggcgagctgtggccgacctttgatgat
ctgctggccgatggatttgcgccgctgagccgtcgtctgtacggcccactggtcgcgcgt
ctagtcgatgctgagcagcatctgtaa
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