Zymobacter palmae: ZBT109_1958
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Entry
ZBT109_1958 CDS
T05646
Name
(GenBank) superfamily II DNA and RNA helicases
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
zpl
Zymobacter palmae
Pathway
zpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZBT109_1958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zpl03019
]
ZBT109_1958
Enzymes [BR:
zpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZBT109_1958
Messenger RNA biogenesis [BR:
zpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZBT109_1958
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBG30704
UniProt:
A0A348HGF2
LinkDB
All DBs
Position
complement(2153317..2154627)
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AA seq
436 aa
AA seq
DB search
MSESEKQPQPTQNPQRKPKRRRRKPRQARREGGAPSSAPQQAHVALPEVPPVPGQWRFQD
FDLPQPLLRAIAEQGFQYCTPIQGESLAYTLLGRDVVGKAQTGTGKTAAFLIAILAYFLE
EQRPEGQQPSTPRALIIAPTRELALQIEKDAQTLIRYTDITIASLVGGMDYQKQQQQVKR
RVDLVIATPGRLLDFQQRGDLDLRQVEVLVLDEADRMLSMGFIPDVKRIIRATPRREERQ
TFLFSATFTQDILNLSSQWTHEPAYVEIEAKTQTADNVEQHVYLVSDQDKPRLLSNILKQ
STHERVMVFANRRDRVRKLDEHLRAEGLNVAMLSGDVAQKQRLRTLEQFREGDVNVLVAT
DVAGRGIHIDGVSQVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFMGEEDAYALPDIEA
FIKNKLPCEHPPEGLL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaaaagcaaccacaaccgacccagaaccctcagcgtaaacccaagcgc
cgccgtcgcaaaccgcgtcaggctcgtcgtgaggggggcgctccgtcttctgcgccacag
caggcgcatgtcgcactgcctgaggtgcctcccgtaccgggacaatggcgcttccaggac
ttcgatcttccccagccgctgttgcgtgccattgccgagcaggggttccagtactgtacg
ccgatccaaggcgaatccttggcgtacacgctgctgggacgtgatgtcgttggcaaggcg
cagacgggaaccggcaagaccgcggccttcctgatcgccattctggcctacttcctcgag
gagcagcgtccagaaggccagcagcccagcacaccgcgcgcactgattattgcgccgacg
cgcgagctggcgcttcagattgagaaagatgcccagacgctgattcgctataccgatatc
acgatcgccagtctggtcggcggtatggattatcagaagcagcagcagcaggtgaaacgt
cgcgtggatctggtgatcgcaaccccagggcgtctgctcgacttccagcagcgtggcgac
ttggatctgcgtcaggtcgaagtgttggtgctggacgaagccgaccgcatgctgtcgatg
ggcttcatcccggacgtgaaacgcatcatccgggcgacaccgcgtcgtgaagaacgtcag
acgttcctgttctcggcaacgttcacacaggacatcctcaatctgtcgagccaatggacg
cacgaaccggcctatgtcgagatcgaagcgaagacccagacggccgacaacgttgagcag
catgtctatctggtcagtgatcaggacaagccgcgcttgctgagcaatatcctcaagcag
tcgacgcatgagcgtgtcatggtgttcgctaaccgtcgtgatcgggtgcgcaagcttgat
gagcatctgcgtgctgaagggttaaacgtagcgatgctgtccggtgatgtggcacagaaa
cagcgcctgcgaacgcttgaacagttccgcgaaggtgacgtcaacgtgctggtcgcgacc
gatgtcgcagggcgtggtattcatattgatggcgttagtcaggtcatcaattataccctg
ccggaagaccctgaagactacgtgcaccgtatcggtcgtaccggccgtgcgggcgcaaaa
ggggtatccatcagcttcatgggtgaagaagacgcctatgcactgccggatattgaagcg
ttcatcaagaacaagctgccctgtgagcatccgccggaaggcctgctctaa
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