Zymobacter palmae: ZBT109_1990
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Entry
ZBT109_1990 CDS
T05646
Name
(GenBank) ribonucleases G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
zpl
Zymobacter palmae
Pathway
zpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZBT109_1990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zpl03019
]
ZBT109_1990
03009 Ribosome biogenesis [BR:
zpl03009
]
ZBT109_1990
Enzymes [BR:
zpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ZBT109_1990
Messenger RNA biogenesis [BR:
zpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ZBT109_1990
Ribosome biogenesis [BR:
zpl03009
]
Prokaryotic type
rRNA processing factors
ZBT109_1990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
BBG30736
UniProt:
A0A348HGI4
LinkDB
All DBs
Position
2184418..2187903
Genome browser
AA seq
1161 aa
AA seq
DB search
MKRILINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRARITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFLKDPGNGRPNIRDVIREGQEIIVQVDKEERGNKGAALTTFIS
LAGRFLVLMPNNPRAGGISRRIEGEDRAQLKDAMNGLTIPDKMGVIVRTAGIGRSTEELQ
WDLNYLVKVWEAITDAAQQPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEDVHQDAMN
FVQQVMPAYAPRIKLYQDEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDITEALVSID
INSARATRGGDIEETALQTNLEAADEIARQLRLRDSGGLVVIDFIDMSPARNQREVENRM
REALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSV
LRLIEEEAMKDRSAQIRAVLPVPVATFLLNEKRAAIAEIEQRESVNVILLPEPDMDTPHF
QVERLRDDQMDDEEPKASYEIDTQYKTPEAHDHGEVLIAREEAVVKTVAHTAPAPTTLTQ
PSTAQPQMDAHATGLLTRLMRSVNRLLSGDDSSSQQEKDSAATTAREPQSSKQNSSESRK
PARRERPQAQSSAPAREQREDKNGRSAPQANADSQRSDSDQEQPKRNTRNRQEERNRRRQ
ERRNNRPEQDDNRSSAAADAPAKNGDDNRRGRNRNAQNSDKPQPQERDNRRANRSEQPSE
TTATATESAATQAPRSNTEDKANDGAPKRKRNNPRQRSRTHALNPEAVAEQQRLQEGAAP
QSQDAAATQDTVAPAKAEDTKSAAPAKTAEEKSAPAIAQAHVENAQPRYHTFGRDTTTLE
PNKAPAVSQDAQQPAAGNERGETKPSRPRRSRPETAHADKPATPKAEEKREQPTKPEAVA
DKPATPKAEEKREQPAKPEAVADKPATPKAEEKHEQPTKPEVAADKPATPKAEEKREQPA
KPEAVADKPVAPKAEEKREQPAKPEVAADKPATPKTEEKREQPAKPEAVADKPVAPKAEE
KREQPAKPEAVADKPVAPKAEEKREQPAKPEVAADKPATPKAEEKREQPTKPEVAADKPA
TPKAEEKHEQPAKPEAVADKPVAPKAEEKREQPAQQEATADKSAAPAADDQPLALPRRSR
RAHNDPRERRRAEQQTPSDNA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggattctcatcaacgcaacccagcccgaagagctgcgcgttgcgctcgtagat
ggccaacgcctctacgacctcgacattgagtcgggtgcccgcgaacagaagaaggctaat
atctatcgcgcccgcatcacccgcgtcgaacccagtctggaagcagcgttcgtcgacttt
ggtgccgaacgccacggttttctgccactcaaagaaatctcccgcgaatacttcctcaag
gatccgggcaacggtcgtcctaatatccgtgacgtcattcgtgaaggtcaggagatcatc
gttcaggtcgacaaagaagagcgtggcaacaagggtgctgccctcacgaccttcatcagc
ctagcgggccgcttcttggtcctgatgccgaacaacccgcgtgctggtggcatctcccgc
cgcattgagggcgaggatcgcgcacagctgaaagatgccatgaacggcctcactatcccg
gacaagatgggcgtcatcgtccgtacggctggcatcgggcgttctacggaagagctgcag
tgggaccttaactatctggtcaaggtctgggaagcgatcaccgacgcagcccagcagcct
gcgccattcctcatctatcgcgaatcgaacgtcatcattcgcgcgatgcgtgactacctg
cgtcaagacatcggcgaagtgctgattgatagcgaagacgtccatcaggacgcgatgaac
ttcgtccagcaggtcatgccggcctatgcgccgcgcatcaagctctatcaggatgaagtg
ccgctgttctcgcgcttccagatcgaatcacagatcgaaacggcctatcagcgtgaagtg
aaactgccctccggcggttccatcgttatcgacatcacagaagcactggtctccatcgac
atcaactcggcacgcgctacgcgcggcggtgatatcgaagaaactgccctgcagaccaac
ctagaggcggccgacgagatcgcgcgccagctgcgtctgcgtgatagcggtggtctggtc
gtcatcgacttcatcgacatgtcgccggcccgcaaccagcgcgaagtcgaaaaccgtatg
cgtgaagcgctcaagttggatcgcgctcgcgtacagatcggccgcatctcgcgtttcggt
ctgatggagatgtcccgtcagcgcctgcgcccatcgctgggtgaaaccagtggcgtggtc
tgcccgcgctgtaacggccagggcactatccgtgacgtacgctccctgtcgctgtccgtc
ctgcgcctgatcgaagaagaggccatgaaggaccgcagcgcacagattcgtgccgtcctg
cccgtgccggtcgccacgttcctgctcaacgagaaacgtgccgccatcgctgagatcgaa
caacgcgaaagcgtcaacgtcatcctgctgcccgagccggacatggacacgcctcacttc
caggtcgagcgcctgcgcgatgaccagatggacgatgaggaaccgaaggccagctacgag
atcgacacacagtacaaaacgccggaagcccacgatcacggtgaagtgctgatcgctcgt
gaagaagcagtcgtcaagacagttgcccacacggcaccggcgcccaccacgctgacccag
ccaagcaccgcacagccgcagatggatgcccacgccacagggctgctgacccgcctgatg
cgcagtgtcaatcgcctgctcagcggcgatgattcttcttctcaacaggagaaggacagc
gcagccactacagcccgcgaaccgcagagcagcaagcagaacagcagtgaatcccgcaaa
cctgctcgtcgcgaacgcccgcaggcacaatcgtcggcacccgcacgtgagcaacgtgaa
gacaaaaacggccgttcggcaccgcaagccaacgcggacagccaacgtagcgatagcgat
caggaacagcctaaacgcaacacccgcaaccgtcaggaagagcgcaatcgtcgccgtcag
gagcgtcgcaataaccgccccgagcaggacgataaccgttccagcgcagcagcagatgcc
cctgcgaagaacggcgatgacaaccgtcgcggccgtaatcgcaatgcccaaaacagcgac
aagcctcagccgcaggagcgcgacaaccgccgtgccaatcgcagcgagcagccgtccgaa
accacagctactgccactgaaagtgctgcaacacaggcgcctcgtagcaataccgaggac
aaagctaacgatggcgcaccgaaacgcaaacgcaacaatccgcgtcagcgttcacgtacg
cacgcactgaatcctgaggccgtagcggaacagcaacgcctgcaggaaggcgctgcaccg
caaagccaagatgcagcagcgacgcaggacacggtagccccggccaaagcagaagataca
aaatccgctgcccccgccaaaacggcagaagagaaatcggcaccggctattgcgcaagcg
catgtcgagaacgctcagcctcgttaccatacgttcggtcgcgacacgaccactctggaa
ccgaacaaggccccggcagtatctcaggatgcgcagcaacctgcggcgggtaacgagcgt
ggtgaaacaaaaccttctcgcccacgtcgctcacgtccggaaacagcacacgctgataaa
ccggcaactccgaaggctgaagagaagcgcgaacagccgaccaaaccggaagcagtagct
gacaaacccgcaacgccgaaggctgaagaaaagcgtgagcagccggcaaaaccggaagca
gtagctgacaagcctgcaactccgaaggctgaagagaagcatgagcagccgaccaaaccg
gaagtagccgctgacaagcccgcaacgccgaaggctgaagagaagcgcgaacagccggca
aaaccggaagcagtagctgacaagcctgttgctccgaaggctgaagaaaagcgtgaacag
ccggcaaaaccggaagtagccgctgataagcctgcaacgccgaagactgaagaaaagcgc
gagcagccggcaaaaccggaagcagtggctgacaagcctgttgctccgaaggctgaagaa
aagcgtgaacagcccgccaaaccggaagcagtagctgacaagcctgttgctccgaaggct
gaagagaagcgtgaacagcccgccaaaccggaagtagccgctgacaagcccgcaacgccg
aaggctgaagagaagcgcgaacagccgaccaaaccggaagtagccgctgacaagcctgca
actccgaaggctgaagagaagcatgagcagccggcaaaaccggaagcagtggctgacaag
cctgttgctccgaaggctgaagagaagcgtgagcagcctgcccagcaagaagcaacggct
gataaatctgcagcacctgctgccgacgatcagccgctggcgctgccgcgtcgctcccgt
cgtgcacacaacgatccgcgtgaacgtcgtcgtgccgagcagcaaacgccttcagacaac
gcgtaa
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integrated database retrieval system
