Zunongwangia profunda: ZPR_0236
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Entry
ZPR_0236 CDS
T01216
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
zpr
Zunongwangia profunda
Pathway
zpr03410
Base excision repair
zpr03430
Mismatch repair
zpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ZPR_0236
03430 Mismatch repair
ZPR_0236
03440 Homologous recombination
ZPR_0236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zpr03400
]
ZPR_0236
DNA repair and recombination proteins [BR:
zpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ZPR_0236
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ZPR_0236
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ZPR_0236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADF50597
UniProt:
D5BCT4
LinkDB
All DBs
Position
238465..240168
Genome browser
AA seq
567 aa
AA seq
DB search
MNSRWTIKPNPNPDIVNSLMQSLGVGKPIARLLAQRGINSFEEAKKFFRPNLKDLHDPYL
MRDMDKAVARIEKALAEEENIMVYGDYDVDGTTSVALMSSYLKTRYPNVATYIPDRYNEG
YGVSYQGIDFAADNDISLIIALDCGIKAIDKVAYAREKGIDFVICDHHRPGEKIPEAAAV
LDPKREDCEYPYKELCGCGVGFKLIQALAEKRGDSIQVLLPYLDLVATAIGADIVPITGE
NRILAYHGLHVINVAPRQGFKAILSQLKKETITITDVVFVIAPRINAAGRMKHGLHAVEL
LTEEKEEQAQQFASEIEYHNSHRKDTDKSITAEALVQIEELEEQERLSTVVYADHWHKGV
IGIVASRLTETYYRPTLVFTKSGDKLAASARSVKGFDVYNALEACQEHIEQFGGHMYAAG
LTIKEEEYDNFKRKFEEVVAETIDRKLLTPEISIDAEIELDEITPKFWRILKQFAPFGPG
NMSPLFMSRNLTDSGFGKCVGNEHTHLKCKVSQLNNTASFDVIGFNLGEKLELIQNKKSF
SAVYAVDENEWNGNVSLQLKLKDLKEV
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaacagccgctggactataaaacctaaccctaacccagacattgtaaattctttaatg
caatctcttggagtaggcaagcctattgcccggcttttagcccaacgtggtatcaatagc
ttcgaggaagcaaagaaattctttagaccaaatctcaaagaccttcatgatccatactta
atgcgggatatggataaagcggtagccagaattgaaaaggcactcgctgaagaagagaat
atcatggtgtacggtgattatgatgtagacggaaccaccagcgtagcactaatgtcttcg
tacttaaaaacgcgatatccaaatgtagctacctatattccagatcgctataacgagggc
tacggggtttcctaccagggaatcgattttgctgccgataacgatattagtctaattata
gcgttagattgcggaattaaagccatcgataaagtcgcctatgccagggaaaaaggtatt
gattttgtgatttgtgatcaccaccgtccgggtgagaaaattcctgaagcggctgcagta
ctagatcctaaacgggaagattgtgaatacccttataaagaattgtgtggatgcggagtt
ggttttaaactcatacaggctttggcagaaaaacgtggggatagtatacaggtattatta
ccttatttggatttggtggctactgcaattggtgctgatattgtacccattactggagaa
aaccgcattttagcctatcatggtttgcacgtgattaatgtggcgccaagacaaggcttt
aaagcgatattgagtcagcttaaaaaggaaactatcaccattacagatgtggtttttgtg
atcgccccgcgaataaatgctgccggaaggatgaaacatggtttgcatgcggtcgagcta
cttactgaagaaaaagaagaacaagcacagcaatttgcttctgaaatagaatatcataat
tcccatagaaaagatacggataaatcaattaccgctgaggctttagtgcaaattgaagag
ttagaggagcaggagcgtttaagtaccgttgtttatgccgatcactggcataaaggagtt
attgggattgtggcaagtagacttacagaaacctattatcgcccaacattggtttttacc
aaaagtggagataagctggcagcatcggcaagatcggtaaaaggttttgacgtctataat
gcgctagaggcttgccaggagcatatcgagcagtttggaggccatatgtatgcagcggga
ctaaccattaaggaagaagaatatgataattttaaaagaaagtttgaagaagtggttgct
gagaccatcgatagaaaactactgactcctgaaattagtatcgatgccgaaattgaatta
gatgaaattactcctaaattttggcgaatcttaaagcaatttgcgccgtttggcccgggc
aatatgtctcctctttttatgtctcgaaatttaaccgattctggattcgggaaatgcgta
ggtaatgaacatactcatttaaaatgtaaggttagccagcttaacaatacagcttctttt
gatgtaattggttttaatctgggagaaaaactggaacttatccaaaataaaaaatccttt
agcgctgtatatgctgtagatgaaaacgaatggaacgggaatgtttctttgcagttaaaa
cttaaggatctcaaggaagtttaa
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