Zunongwangia profunda: ZPR_0970
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Entry
ZPR_0970 CDS
T01216
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
zpr
Zunongwangia profunda
Pathway
zpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZPR_0970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zpr03021
]
ZPR_0970
03019 Messenger RNA biogenesis [BR:
zpr03019
]
ZPR_0970
Transcription machinery [BR:
zpr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ZPR_0970
Messenger RNA biogenesis [BR:
zpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ZPR_0970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
ADF51316
UniProt:
D5BHS8
LinkDB
All DBs
Position
complement(1059526..1061184)
Genome browser
AA seq
552 aa
AA seq
DB search
MFEISELKAKKLPELQEIAKSLNVPKFRSLKKLDLVYQILDYQAANPAKTKEALQEEKAE
EKKTEDKPKRPRKKIGSDKKPGRPKKAEETTPEAKLEVKDESPAKNNQDSTSKPESKAPK
KEKESSKNDDNASRNNNRSTNNRKDSRNNKKDNRNDNNNNNNHKNNGNRDNRNRYREPDY
EFDAIIESEGVLDIMQDNYGFLRSSDYNYLTSPDDIYVSQSQIRLFGLKTGDTVLGQIRP
PKEGEKYFPLIKINKINGLDPQVVRDRVSFEHLTPLFPKEKFNIADKESSISTRVMDLFS
PIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQRNVQGE
VVASTFDKEAHEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLS
GGVDANALHKPKRFFGAARNIEGGGSLSIIATALTDTGSKMDEVIFEEFKGTGNMELQLD
RRISNRRVFPAIDLISSSTRRDDLLLDENTIQRMWIMRKYLADMNPVEAMEFIQQKIKQT
NNNEEFLISMNG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttctgaattaaaagctaaaaagctacctgagcttcaggagattgctaaa
tctctaaacgtcccaaagtttagaagtcttaaaaaactagatcttgtttaccaaatttta
gactaccaggctgctaaccctgcaaagaccaaagaagctctacaagaagaaaaggccgaa
gagaaaaaaaccgaggataagccaaaaagaccaagaaagaaaattggtagtgataaaaaa
cctggcagacctaagaaggctgaagaaacgactccagaagcaaaactagaagttaaagat
gaaagtcctgcgaaaaacaatcaggacagtacttctaaacctgaaagtaaagctcctaaa
aaggagaaagaatcgtctaaaaacgatgataatgcttctaggaataataacagaagtact
aataatcgtaaagattccagaaataataaaaaggataaccgtaacgacaataacaacaat
aataatcataaaaataacggtaaccgtgacaatcgcaacaggtaccgtgagccggattat
gagtttgatgctattatcgaaagtgaaggtgttttagacatcatgcaggacaactatggt
ttcctaagatcctcagattacaactaccttacttctcctgacgacatttacgtatcacaa
tcccaaattcgactttttggtttaaaaacaggagacacagtattagggcaaataagacct
ccaaaagaaggtgaaaaatatttccctctgattaaaatcaataaaattaatggtcttgac
ccacaggtagtaagagatcgtgtttcttttgaacaccttacgccacttttccccaaagaa
aaatttaatatcgctgataaagaaagttctatttctacaagagtgatggatttattttct
cctatcgggaaaggacaacgtggtatgatcgtttcgcaacctaaaaccggtaaaacaatg
ttattaaaagacattgccaatgccattgctgcgaaccatcctgaagtatatcaaattatc
cttttgatcgatgaacgtcctgaggaagttacagatatgcaacgaaacgtacagggtgaa
gttgttgcctctacatttgacaaagaagctcatgagcatgttagagttgccaatattgta
ttagagaaagcaaaacgtcttgtagaatgtggtcacgatgttgtaatcttactagattct
attacacgtcttgccagagcatataataccgtacagcctgccagtggtaaggttttgagt
ggtggtgtagatgctaacgctttacataaacctaagcgtttctttggtgctgcacgtaat
attgaaggtggtggttcactttctattattgctactgcccttaccgatacaggttctaag
atggatgaggttatctttgaagaatttaaaggaacaggaaatatggaacttcagctagat
cgtagaatttctaaccgaagagtattcccagcgatcgatcttatatcttcaagtacgcgt
cgtgacgatcttcttttagatgaaaacactatacagcgtatgtggattatgcgaaaatat
cttgctgatatgaatcctgtagaagcgatggaatttattcagcaaaaaatcaaacaaacc
aacaataatgaggagtttcttattagcatgaacggctaa
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