Zunongwangia profunda: ZPR_2111
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Entry
ZPR_2111 CDS
T01216
Name
(GenBank) DeaD-like DEAD box family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
zpr
Zunongwangia profunda
Pathway
zpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZPR_2111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zpr03019
]
ZPR_2111
03009 Ribosome biogenesis [BR:
zpr03009
]
ZPR_2111
Enzymes [BR:
zpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZPR_2111
Messenger RNA biogenesis [BR:
zpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZPR_2111
Ribosome biogenesis [BR:
zpr03009
]
Prokaryotic type
rRNA helicases
ZPR_2111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CID
Motif
Other DBs
NCBI-ProteinID:
ADF52436
UniProt:
D5BAS3
LinkDB
All DBs
Position
complement(2263773..2265569)
Genome browser
AA seq
598 aa
AA seq
DB search
MNKFQELGLNSSILKAIEDMGFESPSEVQEKTIPILLDEETDMVALAQTGTGKTAAFGFP
LIQKIDPKSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITDQAKQIE
RGAQIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNT
WLFSATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNARDRYAALKRLADAN
PDIFSVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLVATD
VAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSIERI
IKQSFDEKQLPDGKDICKVQLLHLANDIKDTEINHDIEEYLPNINKVLEDFTKEELIKKF
FSVEFTRFSNYYKKASDLSPVSGGANVDLDPNSTRYFMNVGKKDGFDWMSLKDFLKDALQ
LGKDGVFKVDVKDSFSFFNTENSETDKVLNAFNDFEYQGRKINVEVTKNSNSGGGKGGRR
RKSRRDDGFGKSDSKSGNKGRSRFRDDKDGGFKGKKGKRSGSRGKNIESSIKRRKSKK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattccaagaattaggtttaaattcctcgatcttaaaagcaattgaagacatg
ggctttgaaagccctagtgaagtacaggaaaaaaccatccccattttattagacgaagag
accgatatggttgccttagcccagaccgggacaggaaagacggcagcttttggtttccct
ttgattcagaaaatagacccgaaatcaaagcacacacaggcattaatcttatctcctacc
agagaattatgtctgcaaattacaaacgaacttaagaattactctaaatatgagccttca
ttacatccggtagcggtttatggtggggcaagtattaccgatcaggctaagcaaatagaa
cgcggtgcccagattatcgttgctactcctggtaggatgcaggatatgataagacgtaaa
cttactgatatctcaaaaatcgaatattgcgttttagatgaagcagacgaaatgctgaac
atgggattctatgaagatattacagctatcctatcccatacgcctaaagaaaaaaacacc
tggttattttcagcaacaatgccaaaagaggttgctacaatcgctaaaaaatttatgcgc
aaccccgttgaagttaccgtaggtagcaaaaatatgggagctactaatgtttcgcatgag
ttttatttggtaaatgctcgcgatcgctatgctgctttaaaaaggcttgccgatgcgaat
cccgatattttctcggtgattttttgccgaactaaaagagacacacaaaaagttgcagag
cgcttaatcgaagatggttactctgcagcagcattgcacggggatttaagtcagaatcaa
cgtgatttggttatgaaatcttttagaacacgccaaatccaaatgttagtagctacagat
gttgctgccagaggaattgatgtagacgatatcacccatgtaattaactatcagcttcca
gacgaggttgaaacctacacccaccgtagcggtcgtacaggtcgtgcaggtaagttggga
acctcaatggtgatcgtttctaaaagtgaacttagaaaaataaaaagtatcgaacgtatc
atcaaacaatcttttgatgaaaagcaattacctgatggtaaagatatttgtaaagttcag
cttttacacctggctaacgatattaaagatacagagatcaatcatgatattgaagaatat
ctacctaatatcaataaagtgctcgaagattttaccaaagaagaattgatcaaaaaattc
ttttcggtagaatttacaagattttcaaattactataaaaaagccagcgatctttcacca
gtaagcggaggtgctaatgtagatcttgatcctaactctacccgttattttatgaacgtg
gggaaaaaagacggatttgactggatgagccttaaagactttcttaaagatgccttgcaa
ttaggtaaagatggtgtttttaaagttgatgtaaaagacagtttctctttctttaataca
gagaattctgaaaccgataaagtacttaatgcctttaacgattttgaataccagggaaga
aaaattaatgtagaagtaaccaaaaactccaacagtggtggaggaaaaggaggacgccga
agaaaaagccgtagagatgacggttttggaaaaagcgattccaaatctggtaacaaagga
agatcacgttttagagatgataaagacggtggatttaaaggcaaaaaaggaaaacgttct
ggcagccgtggaaaaaatatagaaagttctattaaaagaagaaaatctaaaaagtaa
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