Zunongwangia profunda: ZPR_4539
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Entry
ZPR_4539 CDS
T01216
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
zpr
Zunongwangia profunda
Pathway
zpr02020
Two-component system
zpr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ZPR_4539
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ZPR_4539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zpr03021
]
ZPR_4539
Transcription machinery [BR:
zpr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ZPR_4539
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
SPT2_N
SF3b1
LacI
Motif
Other DBs
NCBI-ProteinID:
ADF54840
UniProt:
D5BDD4
LinkDB
All DBs
Position
4893558..4895030
Genome browser
AA seq
490 aa
AA seq
DB search
MLKQQLNFKLSQKLSPQQIQLMKLIQLPTQAFEQRIKQEIEENPALETGKDEQRDEYDYE
DEYDNRDSEAEFDDNNEIDAEDINVDEYLSDDEIPSYRLQANNYSADDEEKQVPYAAGTS
FTQHLRNQLNTFRFDDTEFEIAEFLVGSIDESGYIRRNIPDVVDDLAFTQNVYTDEPTVE
KVLKKVQELDPAGVGARSLKECLLIQLKRKDPTRAVTLASDIIEESFDQFSKKHYTKLLS
KHDISEDELREAIEVISHLNPKPGGAYSGNTRMVEHVIPDFTIKIVDGDLELSLNGRNAP
EMHVSRDYSNMLKGYKESKKKTKEQKDAVMFIKQKLDAAKWFIEAIKQRQQTLMVTMSSI
MHYQKEYFLTGDERNLRPMILKDIADEIEMDVSTVSRVANSKYVDTPYGTKLIKEFFSES
MKNDQGEDVSTREIKKILEMSIEEEDKRRPLTDEKLAKVLKDKGYPIARRTVAKYREQLD
IPVARLRKEI
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacagcaattaaattttaagttatcacaaaagctatctccgcagcaaatccag
ttgatgaagcttattcaattgcccacacaggcttttgaacagcgtattaagcaggaaatc
gaggaaaatcccgctttagaaaccgggaaggatgagcagcgcgatgaatatgactatgag
gatgaatatgataacagagattctgaagctgaattcgacgataataacgagatcgatgca
gaagatattaatgttgatgaatatttaagtgatgatgaaatacccagctatcgcttacag
gccaataactatagtgcggatgacgaagagaaacaagttccttatgctgccggaacttcg
ttcacccagcaccttagaaatcagttaaacacctttagatttgatgataccgagtttgag
attgctgagtttttggtaggaagtattgatgaaagcggctatataaggagaaacattcct
gacgtggtcgatgaccttgcctttacgcaaaatgtttataccgacgaaccaactgtcgaa
aaagtccttaaaaaggttcaggaattagatcctgcaggagttggggcacgttcgcttaag
gaatgtttgctaattcagctaaaaagaaaagatcccaccagagcagtaactttagcttca
gatatcatagaagaatctttcgatcagttcagtaaaaaacattataccaaactgctttcg
aagcacgatatttctgaagatgaacttagagaagctattgaagtgataagtcacctaaac
ccaaaaccgggtggtgcttattctggaaatactagaatggtagaacatgttattccagac
ttcactattaaaattgttgatggggatctggagcttagcttaaacggaagaaatgctcca
gagatgcatgtttccagggattatagcaatatgcttaaaggctataaagaaagtaagaaa
aaaaccaaggagcagaaggatgccgtaatgtttattaaacagaagctggatgcggcaaag
tggtttattgaagccataaaacaacgccagcaaacactgatggttaccatgagttcaatt
atgcattatcaaaaagaatatttcttgacgggcgacgagcgtaaccttagacccatgatc
ttaaaagatattgctgatgagatcgaaatggatgtttcaaccgtatccagagttgccaat
agtaaatatgtggatactccttacggcaccaaattaataaaagaattcttctctgaatcc
atgaaaaatgatcagggcgaagacgtttctaccagagaaataaagaaaatccttgaaatg
tctattgaagaggaagataaaagaagaccactaacagatgagaaacttgcgaaagtctta
aaagacaaaggttatcctatcgcaagaagaacagtagccaaatacagagaacaattagac
attccagtagcgcgcttacgtaaagaaatttaa
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integrated database retrieval system
