Zunongwangia profunda: ZPR_4599
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Entry
ZPR_4599 CDS
T01216
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zpr
Zunongwangia profunda
Pathway
zpr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZPR_4599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zpr03400
]
ZPR_4599
Enzymes [BR:
zpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZPR_4599
DNA repair and recombination proteins [BR:
zpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ZPR_4599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADF54899
UniProt:
D5BDJ3
LinkDB
All DBs
Position
complement(4955653..4959033)
Genome browser
AA seq
1126 aa
AA seq
DB search
MSTSTIAQSFAQSPQQQELRDAIAVSEKNTDKIHLKGLIGSSLSFVVANAFKEAKRPFLL
ILNDKEEAAYHLNDLEQLIGEDNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PAVIVTYPDALFEKVVTRKELDRSTLKIKVNDELSIDFVNEVLFEYKFKRVDFVTEPGEF
SVRGGIIDVFSFSNDEPYRIEFFGDEVDSIRSFDVETQLSTDKVNKISIMPNVENKHLDE
VRESFLKYIAENTLIFVKNLDLFSAQMDKLFEKAEEAFQKLSGEIKQSEPAALFCTSSLI
HKQILDFSVVELSNYPLLNPKKEIVFFVTPQPSFNKQFDLLIANLIENQEKGYNNYIFCG
SEQQAKRFHDIFKDQEKEVKYKTVVLSLFQGFIDEQAKNVCYTDHQIFERYHKFSLKNGY
AKKQAITLKELTNLTVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDILYLSI
HSLHKISKYNGKDGKEPKIFKLGSNAWKNLKKKTKARVKHIAYNLIELYAKRRLQKGFAY
GPDSYLQHELEASFIYEDTPDQSTATEAVKKDMENERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAFQHHQTFSERLKDLPVTVDYLNRFRTAKERRETLADLESGR
VDIIIGTHQLVNKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTL
QFSLMAARDLSTITTPPPNRYPIESNVIRFSEETIRDAVLYEIQRGGQVFFIHNRIENIK
EVAGMIQRLVPDAKVGIGHGQMEGKKLEKLMLSFINGEFDVLVSTTIIESGLDVTNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEEARKRMTALEQFSELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILAEAIEELKENEFKELYNEEDIEDK
DFVKETQIDTDFEILFPDDYINNIAERLNLYTKLNELKTEEELEKFETELIDRFGELPVS
AVDLLNSVRIKWIASKIGLERIIMKQNKLIGYFIADQQSRFYQTANFTKVLQYVQSHPTT
CKMKEKKTRNGLRLLLTFDKITSIEKALKVLQPLDFRKKKEEVEEA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatctactatcgcccaaagttttgcacaatccccgcaacagcaggaattgcgg
gacgctattgccgtttcagaaaaaaacaccgataaaattcatttaaaaggtcttattggc
tcatccctttcttttgtggtggccaatgcttttaaagaagccaaacgtccttttttatta
attctgaatgataaagaggaggctgcatatcacttaaatgatttggagcagttaatcgga
gaggataatgtgttgttctatcctggcagttaccgtaggccttatcaaattgaagaaacc
gataatgccaatgtgcttttgcgtgccgaggtcttaaaccgaatcaattcgcgcaagaaa
ccggcggtgattgttacttatcccgatgcgctttttgaaaaagtagttacccgaaaagaa
cttgatagaagtacactgaagattaaagtgaacgacgaactttctatcgattttgtaaat
gaagttttgtttgaatacaagttcaaacgagtagattttgttacagaacccggcgaattt
tcagtacgaggagggattattgatgtattttcttttagtaatgacgagccgtaccgaatc
gaattttttggggatgaggtagatagcatcaggagttttgatgtagaaacccaactttct
accgataaggtgaacaagatttctattatgcccaatgtcgagaataaacacctcgatgaa
gtaagagaaagctttttaaaatatatcgctgaaaataccttgatattcgttaaaaatctc
gatcttttttcagcgcaaatggataaactttttgagaaggcagaagaagctttccaaaaa
ctttccggagaaataaagcaaagtgaacctgcagcacttttttgtacctcttccttaatt
cataaacaaatccttgatttttcggtggtagaattaagcaattatccgttgctaaacccg
aaaaaagagattgttttctttgtaacgccgcaaccttccttcaacaaacaattcgattta
ttgattgccaatttaatcgaaaatcaagaaaaaggatataacaattatattttctgcgga
agcgagcagcaagccaaacgtttccacgatatttttaaagatcaggaaaaagaggtaaag
tataaaacggtagtcctttccttatttcaaggatttattgatgaacaggcaaaaaatgtt
tgttataccgatcatcaaatttttgagcgttaccataaattcagccttaaaaatggctac
gccaaaaagcaggcaattaccctaaaagaattgaccaaccttaccgtaggtgattatgta
acccacattgatcacggaattgggaagtttggcggattgcaaaaaatagatgtagaaggc
aaaaaacaggaagccattaaactgatttatggagagcgcgatatcctgtatttaagtatt
cattccctacataaaatctcgaaatataacggcaaagacgggaaagaacctaaaatcttc
aagttaggtagtaatgcttggaaaaacctgaagaaaaagaccaaagcccgcgtaaaacat
atcgcctataatttaattgaattatatgcgaaacgccgcttgcaaaaaggttttgcgtac
ggtcccgattcttatttgcaacacgaactggaagcttcttttatttatgaagatacacca
gaccaaagtacagcgaccgaagcggttaaaaaagatatggaaaacgaacgcccaatggac
cgattggtttgtggggatgttggttttgggaagaccgaagtagccattcgcgctgccttt
aaagcggtagataatgggaagcaagttgcggttttagtgcccacgacgattttggccttt
cagcatcatcaaactttttcggagcgtttaaaagatttacccgtaacagtcgattactta
aatagatttagaaccgccaaagaacgccgagaaacgctagccgatctggaaagcggtcgc
gtagatattatcattggaacacatcaattagtaaacaaggcggttaaatttaaagatctt
ggactgctgattgttgatgaagaacaaaagtttggagtagcggtaaaagataagctgaag
accatcaaagaaaatgtcgatacattgacactcacggcaaccccaattccgcgtacgctt
cagtttagtttgatggcggcaagagatttatcgaccattaccactccgccacctaaccga
tatccaatcgaatcgaatgtgattcgtttttctgaagaaaccattcgggatgcggtgtta
tatgaaattcagcgaggcggacaggtgttcttcattcataaccgcattgaaaacatcaaa
gaagttgccggcatgattcagcgtttggtgcccgatgcgaaagtaggcattggtcacgga
caaatggaagggaagaagctggagaaattaatgctgagttttattaatggcgaatttgat
gtgctggtttctaccacgattattgaaagtggattggatgtgaccaatgccaacactatt
tttattaataacgccaataatttcggactgtctgatcttcaccaaatgcgaggtcgggta
ggacgaagcaataaaaaagccttctgttattttatcacgccaccttattcggcaatgacc
gaagaagcgcgtaaacgaatgacggctctagagcaattttctgaattgggaagcggattc
aatatcgcgatgaaagatttggaaattcgtggtgccggagatttattaggcggggaacaa
agcggatttatcaatgaaattggttttgatacctatcagaagattttagcggaagctatt
gaagagctgaaggaaaatgaatttaaagagctgtataacgaagaagatattgaagataaa
gattttgtgaaggaaacacagatcgatactgattttgaaattctattcccggatgattat
atcaataacatcgccgagcgtttgaatttatataccaagctgaacgaattaaaaaccgaa
gaagaattagaaaagtttgaaaccgaattaatcgatcgttttggcgaattaccggtttct
gccgtcgatttattaaatagtgttcgtattaagtggatcgcttctaaaataggcttagaa
cgcattattatgaagcagaataaactgataggctattttattgccgatcagcaatcgcgt
ttctaccaaacagctaattttaccaaagtattgcagtacgtacagtcgcatcctacaact
tgtaagatgaaagaaaagaaaaccagaaatggcctgcgtttgctcttaaccttcgataag
ataacttcgatagaaaaagcactaaaagtattacaacccttagattttagaaagaagaag
gaagaagtggaagaagcttag
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