KEGG   Zygosaccharomyces rouxii: ZYRO0A08272g
Entry
ZYRO0A08272g      CDS       T01118                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
zro  Zygosaccharomyces rouxii
Pathway
zro03013  Nucleocytoplasmic transport
zro03015  mRNA surveillance pathway
zro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ZYRO0A08272g
  09122 Translation
   03013 Nucleocytoplasmic transport
    ZYRO0A08272g
   03015 mRNA surveillance pathway
    ZYRO0A08272g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zro03019]
    ZYRO0A08272g
   03041 Spliceosome [BR:zro03041]
    ZYRO0A08272g
Enzymes [BR:zro01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ZYRO0A08272g
Messenger RNA biogenesis [BR:zro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     ZYRO0A08272g
Spliceosome [BR:zro03041]
 Complex C
  Other components
   EJC/TREX
    ZYRO0A08272g
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ZYRO0A08272g
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 8201648
NCBI-ProteinID: XP_002494727
UniProt: C5DQ33
LinkDB
Position
A:665522..666853
AA seq 443 aa
MSHEGEEDLLEYSDNEQEIQVANKAEGGADAAGGEGTNGAEGTNGDADKKGSYVGIHSTG
FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ
LDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDADLLKNKET
APHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV
MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLDEKEKNRKLAQLLDD
LEFNQVIIFVRSTARANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVST
DVFGRGIDIERINLALNYDLTTEADQYLHRVGRAGRFGTKGLAISFISSNEDEEVLNKIQ
ERFDVKIAEFPEEGIDPSTYLNN
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgtctcacgaaggggaagaagatttattggaatactctgataacgaacaagagattcaa
gttgccaacaaggctgaaggcggagccgatgcagccggtggtgagggtaccaatggtgca
gaaggtaccaatggcgatgcggacaagaaagggtcatatgtggggattcattccaccggg
tttaaagattttcttttgaagcctgaactttcaagagccattatcgattgtgggtttgaa
catccttccgaagttcaacaacatactatcccacaatctatccatggtacagatgtttta
tgccaagctaaatctggtcttggtaaaacagctgttttcgttttgtccactttacaacaa
ttggatcccgttcctggtgaagtcgccgttgtggttatttgtaatgctagagaattggca
taccaaatcagaaacgaatatttgagattttccaaatatatgccagatgtgaagactgca
gtgttttacggtggtactccaatttccaaggatgcagatttgttgaaaaacaaggaaaca
gcacctcatatcgtagtggcaacaccaggtcgtctcaaggctttagttagagacaagtta
attgacctttcacatgtcaaaaactttgtcattgatgaatgtgataaagttttggaagaa
ttggatatgagaagagatgtgcaagaaatctttagggcaacaccaagagataaacaagtg
atgatgttttcagcaactctttcacaagaaattagacctatctgtagaaggtttttgcaa
aatccattagaaatctttgttgatgatgaagccaaattgacattacatggtttacagcaa
tactatattaaattggatgaaaaggagaagaaccgtaaattagcacaattgttggatgat
ttagaatttaaccaagtgataattttcgttagatcgactgcaagggctaatgaattgact
aaattgttaaatgcttccaatttcccagcaattacagttcatggtcacatgaaacaggag
gaacgtattgctcgttacaaggcatttaaagattttgaaaaaagaatctgtgtctctaca
gatgttttcggtagaggtattgatattgaacgtatcaacttagctctaaattacgatttg
acaactgaagcagatcaatatctgcatcgtgttggtagagctggtagatttggtactaag
ggtttggccatctcatttatctcttccaatgaagacgaagaagttttaaacaaaattcaa
gaacgttttgacgttaagatcgctgaattcccagaggaaggtatcgatccatctacttat
ttgaacaattaa

DBGET integrated database retrieval system