Zygosaccharomyces rouxii: ZYRO0B09306g
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Entry
ZYRO0B09306g CDS
T01118
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zro
Zygosaccharomyces rouxii
Pathway
zro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZYRO0B09306g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zro03019
]
ZYRO0B09306g
03041 Spliceosome [BR:
zro03041
]
ZYRO0B09306g
03009 Ribosome biogenesis [BR:
zro03009
]
ZYRO0B09306g
03016 Transfer RNA biogenesis [BR:
zro03016
]
ZYRO0B09306g
Enzymes [BR:
zro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ZYRO0B09306g
Messenger RNA biogenesis [BR:
zro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ZYRO0B09306g
Spliceosome [BR:
zro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ZYRO0B09306g
Complex C
U4/U6.U5 tri-SnRNP related factors
ZYRO0B09306g
Ribosome biogenesis [BR:
zro03009
]
Eukaryotic type
Pre-60S particles
Helicases
ZYRO0B09306g
Transfer RNA biogenesis [BR:
zro03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ZYRO0B09306g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Death_3
nSTAND3
YodE
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
8202507
NCBI-ProteinID:
XP_002495355
UniProt:
C5DRL1
LinkDB
All DBs
Position
B:730191..733388
Genome browser
AA seq
1065 aa
AA seq
DB search
MSGGDLFDVFNEEPVQLPEVSEVPKIEDDKEDNKRPLETETDVEDGQKSSKKAKGDKKKL
SEEDKKKAVVPVVTDAFEQEASREVDPSAGLMNNVNEQLEKEGRLKLMHQVRHQVALPPN
YDYKPIGDHKRMNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS
LRDKQRVIYTSPIKALSNQKYRELLADFGDVGLMTGDITINPDAGCLVMTTEILRSMLYR
GSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICK
IHVQPCHIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISSQSGEDS
GAVDSKGKKGQSFKGGASKGDSKGDIYKIVKMIWKRRYNPVIIFSFSKRDCEELALKMSK
LDFNNEDEKVALTKIFNNAVALLPETDRELPQIVHLLPLLKRGIGIHHSGLLPILKEVIE
ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG
LDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLESS
FYQFQNVISVPIMEKKLAELVKEVDSIHVDDEENVKDYYEIRQTLEGYNDDVRQVITHPA
NILSFLQPGRLVQVVIGGKYSYGWGAVVEFVKRVNRRNPTAVYSDHESYIVNVVVNTMYA
DSPMNLVKPFNPNFPEGIRPAQEGEKSICTIIPITLDSIRTVGNLRLFMPKDVKASGQKE
TVGKSLMEIQRRFEKGIPLIDPMKNMKIEDDDFKKLLRKIEVLESKLFSNPIAQSVRLKE
LYEKYSKKSALNNDINNLKHKITESQAVIQLDDLRRRKRVLRRLGFCTQNDVIELKGRVA
CDITSGDELLLTEMIFNGNFNDLKPEQAAALLSCFSFQERCKEAPRLKPELAEPLKAMRE
AAAKIAKIMKDSKLEIVEKDYVESFRHELMEVVYEWCRGANFTQICKMTDVYEGSLIRMF
KRLEELVKELIDVSNTIGNSALREKMEAVANLIHRDIVSAGSLYL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtggagacttgttcgacgtcttcaacgaagagcctgttcagttgccagaggtt
tctgaggttccaaagatcgaagatgacaaggaagataacaaacgtccactagagacagag
acagatgtagaagatggccagaagagtagtaaaaaggccaaaggtgacaagaagaagcta
tctgaagaggataagaagaaagcagttgttccagtcgtgacagatgcctttgagcaagag
gcctctagagaagtcgatccttcagcaggattgatgaataacgttaacgagcaattggag
aaagaaggtaggctcaaattgatgcatcaagttcgccatcaagtggctctacccccaaat
tatgattataaacccattggtgatcataaaagaatgaatgaagctcgtacctatcctttc
acactggatcctttccaagatacagctatctcatgtattgacagaggtgaatcagtgcta
gtgtctgcacacacatctgcaggtaaaacagtggtggcagagtatgctatcgctcaatcc
ttacgtgataagcaaagagtgatctatacgtctccaatcaaagccctttccaaccaaaaa
tatagagaattgctagcagattttggagatgttggtttgatgactggtgatattactata
aatcctgatgctggttgtttagtgatgactacagaaattttgagaagtatgctttataga
ggtagtgaagtgatgagagaagtcgcttgggtggtttttgacgaagttcattatatgaga
gataaggaaagaggtgtcgtgtgggaagaaactattattctgttacctgataaggttcac
tacgtgtttttgtccgctacgatacctaacgctatggaatttgctgaatggatctgcaaa
atacatgttcaaccttgtcacattgtttacactgactttagacctacacctttgcaacac
tatttattcccagctcatggtgatggtatatatctagtggtggatgaaaagagtactttc
agagaggaaaatttccaaaaggcaatggcaagtattagcagtcaatctggtgaagattct
ggggccgtggatagtaaaggtaaaaaaggccaaagtttcaaaggtggtgcatccaagggt
gattctaaaggtgatatctacaagatcgttaagatgatttggaagcgtagatacaacccg
gttatcattttttcatttagtaaacgtgattgtgaagagttggctttaaagatgtcgaag
ttggactttaataatgaggatgaaaaggttgcattgactaaaatctttaataatgcagta
gctttgttaccagaaaccgatagagaacttcctcagatcgtacaccttctaccgcttttg
aaaagaggtattggtattcatcattctggtcttttacccatcttgaaggaagtgatcgaa
attttattccaagaaggtttcctaaaggtgctgtttgcaacagaaactttctccatcgga
ttgaatatgcctgcaaagactgtggtgtttacatctgttagaaaatgggatggtcaacaa
tttagatgggtttctggtggtgaatacattcagatgtctggtcgtgctggtcgtcgtggg
ttggatgatcgtggtattgttatcatgatgattgatgagaagatggaacctcaagtggct
aagggaatggttaagggtcaagcagatagactagactccgcctttcatctaggttataac
atgattttaaatttgatgagagtggaaggtatttctccagaattcatgttggaaagctca
ttttaccagttccaaaacgtgatatccgttcctattatggagaagaaattggctgaactc
gtcaaggaagtagattccatccatgtcgatgatgaggaaaatgtcaaagattactatgag
attagacaaactttagaaggttataatgacgatgttcgtcaagtcataacccatcctgct
aacatcttgagtttcttacaacctggtaggttggttcaggtcgttattggcggcaaatac
tcttatggttggggtgctgtggttgaatttgtgaagcgagttaacagaagaaatccaaca
gcagtgtattctgaccatgagtcctatatcgtgaacgttgttgtgaatacaatgtatgcg
gattctccaatgaatctggttaaaccttttaaccccaacttccctgaaggtatccgtcct
gcccaagaaggtgaaaagagtatctgtacaattatccctatcactttggattccattcgt
actgtgggtaatttgcgtctctttatgcctaaggacgttaaggctagtggccagaaggaa
actgttggcaaatccttgatggaaattcaaagaagatttgaaaagggaattccactaatt
gatcctatgaagaatatgaaaatcgaagatgatgatttcaagaaactcttgagaaaaatt
gaagtattagaatccaaacttttctccaatccaatcgcacagtcagtcagattgaaggaa
ttgtatgaaaaatacagcaaaaagagtgcgttgaataatgatattaataatctaaaacat
aagatcactgagtcccaggctgtcattcagcttgacgatttgcgtcgtcgtaagagggtc
ctacgtcgtttgggattttgtactcaaaatgatgttattgaattgaaaggtagggttgct
tgtgatatcacaagtggtgatgagttactgttgacagaaatgatctttaacggtaacttc
aatgatctaaaaccagaacaagcagccgccctgttgtcctgtttttcattccaagaacgt
tgtaaagaagctcctcgtctaaagcctgaattagcagagcctttgaaagccatgagagaa
gcagccgccaagattgccaagattatgaaggattctaaactagaaattgtagaaaaggat
tacgttgagagctttagacacgaattgatggaagtggtctacgagtggtgtagaggtgct
aatttcactcagatctgtaaaatgacagatgtttatgagggatccttaattagaatgttc
aagagattggaagaattggtcaaagaattgatcgatgtttcaaacacaattggtaattcc
gctttgagagaaaaaatggaggctgttgcaaacctaatacacagagacatcgtttctgca
ggctccttgtatctctaa
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