Zygosaccharomyces rouxii: ZYRO0B15642g
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Entry
ZYRO0B15642g CDS
T01118
Name
(RefSeq) ssRNA exonuclease RAT1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
zro
Zygosaccharomyces rouxii
Pathway
zro03008
Ribosome biogenesis in eukaryotes
zro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zro00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
ZYRO0B15642g
09123 Folding, sorting and degradation
03018 RNA degradation
ZYRO0B15642g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zro03021
]
ZYRO0B15642g
03019 Messenger RNA biogenesis [BR:
zro03019
]
ZYRO0B15642g
03009 Ribosome biogenesis [BR:
zro03009
]
ZYRO0B15642g
03016 Transfer RNA biogenesis [BR:
zro03016
]
ZYRO0B15642g
Transcription machinery [BR:
zro03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
ZYRO0B15642g
Messenger RNA biogenesis [BR:
zro03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
ZYRO0B15642g
Ribosome biogenesis [BR:
zro03009
]
Eukaryotic type
Pre-60S particles
RNases
ZYRO0B15642g
Transfer RNA biogenesis [BR:
zro03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
ZYRO0B15642g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
BAF1_ABF1
Motif
Other DBs
NCBI-GeneID:
8202788
NCBI-ProteinID:
XP_002495614
UniProt:
C5DSC0
LinkDB
All DBs
Position
B:complement(1269949..1272987)
Genome browser
AA seq
1012 aa
AA seq
DB search
MGVPSFFRWLSRKYPKIISPVIEEQPQVVDGVTLPIDYTAPNPNGELDNLYLDMNGIVHP
CSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFRS
AKDAQIENENRERIMQEREQLGEIIDGAVKTKKTWDSNAITPGTPFMDKLAAALRYWCSF
KLATDPGWKNLQVIISDATVPGEGEHKIMNFVRSQRADAQYNPNTTHCIYGLDADLIFLG
LATHEPHFKVLREDVFAQGNNKRHNLKDSLNMSEEEKQMIAKQDSEKPFLWLHISVLREY
LSAELWVPRMPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLP
TMKTYITCDGELNLESVEKLLSQLGSREADIFKTRHIQEVRKQENFERKKAQRNVSKGQD
RHPTKPNEQLQLYDTNGNLSKSSWNLTTHDMVNLKKEIMLANEGDANAIATVKAQSDKND
QLMNELMNEQMDKAVDEANKTNFTAAEVMKKKLVAKKRRLEAEEEEQRQEEQKEESRKKK
KTEEEATKEEPNLDDQIKAELEEERIEEEEEEEEGQDQEEEQGEKPPDWVPEVSNGGITS
GIVDTDQAVKLHEPGYHERYYTEKFHISPNHIDALRKDLVKCYIEGVSWVLLYYYQGCAS
WTWYYPYHYAPLAADFFGFSDIKVEFPPGKPFLPYEQLMSVLPAASGHTLPPIFRPLMSS
PDSEIIDFYPTEFPVDMNGKKMPWQGIALLPFIDEKRLLQVVRAQYSKLTEEEKSRNVVR
NPILLISNKNANYEKFLKKLYPTDVPPQPELYFQHFRSGLSGVVSTDHEGYRPNSKLSCP
IQTGSLPELSTNLFLKLDYKLVPLPSKNKSIILNGFIASEPVLSPYDLDAVMYKYNNGPP
RRWNFENDMRNNVVPVGPCGVTQYKPRVGGYRSFFFFSNMQQQPPTPMQYQMSGPPINNR
YNGGGNGGGSRYSGSSRYGDPPNNYRNQNNAPGMSRYQTGRFPQRSGTMRRH
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccctcattctttagatggttatctaggaaataccccaagattatatccccc
gtaatagaagaacaaccgcaggtagttgatggtgttacgctgcccatagactatacagct
cctaaccctaatggggaattggataatctgtatttggatatgaatggtattgttcatcca
tgttctcatccagagaataagccaccgccagagactgaagatgaaatgttattagccgtt
tttgagtatactaatcgtgttctaaacatggcaagaccacgtaaagtgcttatgattgct
gttgatggtgttgcaccaagagctaagatgaatcaacagagagctcgtagattcagaagt
gctaaagatgctcaaattgaaaatgaaaacagggaaagaatcatgcaagagcgggaacaa
ttaggtgaaataatagacggtgccgttaaaactaaaaagacctgggattctaatgcaatt
actccaggtactcccttcatggataaattggcagcagcgttaaggtattggtgttccttt
aaattggcaacagatccaggttggaagaatttacaggtcattatcagtgatgctacagtg
cctggtgaaggtgaacataaaattatgaattttgtcaggtcacaaagagcagatgcacaa
tacaacccaaatactactcactgcatatatgggttagatgccgatttaatctttttagga
ttagcaacgcatgagccacattttaaggtgctcagagaagatgtatttgcacagggcaat
aacaagaggcataatcttaaggatagtttgaacatgagtgaggaggaaaagcaaatgatt
gctaaacaagattcagagaaacctttcctttggttacacatcagcgtccttagagaatat
ttaagtgcggaattatgggtgccacgaatgccattccctttcgatttagaaagggctatt
gacgattgggttttcatgtgttttttctgtggtaacgattttttaccacatttgccctgt
cttgacgttagagagaatagtattgatattttattggacatttggaaagtggtactgccg
actatgaagacttatatcacttgtgatggtgaattgaacctagagtctgtagagaaacta
ctttctcaattaggaagccgtgaagctgatatcttcaaaaccagacatattcaagaagtg
agaaaacaagagaattttgaaaggaagaaggcacaaaggaatgtgtctaaaggtcaggat
cgacatccgacaaagcccaatgagcaactacaattgtatgatactaatggtaatttgtct
aagagctcttggaatttgacaacacacgatatggttaatctaaagaaagaaatcatgtta
gccaatgaaggtgacgctaacgctatagcgactgttaaggctcagagtgataaaaatgat
caattgatgaatgaattgatgaatgaacaaatggataaagcggtagatgaagctaacaag
acgaattttacagcagcagaagtaatgaagaaaaagcttgtggccaaaaagcgtagatta
gaagcagaagaagaagaacaaaggcaggaagaacagaaagaagaatctagaaagaagaaa
aagactgaggaagaagcaacgaaggaggaaccaaatcttgacgatcaaatcaaagcagaa
cttgaagaggagagaattgaagaagaagaagaagaggaagagggacaagatcaggaagaa
gaacaaggagaaaaaccaccggattgggttccagaagtttctaatggtggtatcacaagt
ggtattgtagatactgatcaagctgttaagttgcacgaaccaggctatcatgaaaggtac
tatacagagaaatttcacatttcgcctaaccacatcgatgctctacgtaaagacttggtt
aaatgttacatcgagggtgtctcctgggttttattatactattatcaaggttgtgcctct
tggacttggtactatccctatcactatgcgccactggcggcagatttctttggattttct
gatatcaaagttgaatttccaccaggtaaaccatttttgccatatgaacaacttatgagt
gttctgccagcagcatcaggtcacacattaccaccaattttccgtccactaatgagttct
ccagattctgaaattatcgatttttacccaacggagttcccggttgatatgaatggtaaa
aaaatgccatggcaaggtattgctcttttaccatttattgatgagaaaagattattacaa
gtggtacgtgcacagtattctaaattaacagaggaagaaaaatctcgtaatgtggtccgt
aatccaattcttctaatcagtaataaaaatgccaactatgaaaagtttttgaaaaaacta
taccctaccgatgtaccacctcaacccgaattatatttccaacatttccgtagtggtctt
tctggtgtggtctctactgaccatgaaggttacagaccaaatagtaaactaagctgtccg
attcaaaccggttcattaccagagctgtctaccaatcttttcctcaaactggattataaa
ttggtacccctaccaagtaaaaataaatccatcatattaaatggatttattgcatctgag
ccagttctatctccgtacgatttagacgcagtaatgtacaagtacaacaatggacctcct
cgtcgttggaatttcgaaaatgatatgcgtaacaacgttgtacccgttggtccctgtggt
gtgactcagtacaagccaagagttggtgggtatcgatcatttttcttctttagcaatatg
caacaacaaccgccaacaccaatgcagtatcaaatgtcaggcccaccgattaataacaga
tacaatggaggtggaaatggcggcggtagtaggtacagtggtagctcaagatacggcgat
cctccaaacaattatcgaaaccagaataatgcacctggaatgagtcgataccagaccggt
agattccctcagaggtcgggtaccatgaggaggcattaa
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