Zygosaccharomyces rouxii: ZYRO0C17776g
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Entry
ZYRO0C17776g CDS
T01118
Name
(RefSeq) cleavage polyadenylation factor RNA-binding subunit YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
zro
Zygosaccharomyces rouxii
Pathway
zro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
ZYRO0C17776g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zro03021
]
ZYRO0C17776g
03019 Messenger RNA biogenesis [BR:
zro03019
]
ZYRO0C17776g
Transcription machinery [BR:
zro03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
ZYRO0C17776g
Messenger RNA biogenesis [BR:
zro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
ZYRO0C17776g
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_PARP12
zf-CCCH_3
zf-CCCH_RBM22
zf-CCCH_12
DUF4905
Motif
Other DBs
NCBI-GeneID:
8203641
NCBI-ProteinID:
XP_002496410
UniProt:
C5DUL6
LinkDB
All DBs
Position
C:complement(1384991..1385623)
Genome browser
AA seq
210 aa
AA seq
DB search
MTVVHMDTSLYPFKFEPFLRQEYSFSQDPDRPVCEFYNPREGPSSCPRGASCPKKHVLPI
FHNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFYSKNGYCTQTPECQYLHIDPQSK
IAPCEEYTMGFCPQGPNCKKRHVKKVLCPRYLTGFCPLGRRDCDMAHPSFVVPGDLSKLR
IKKDEEINTRKSDAEKERRLNAIINGEIPA
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgtgcatatggatacctcgctgtatccctttaaatttgagccatttctaagg
caggagtactcgttctcgcaggatcctgatagacccgtatgtgaattttacaatccaaga
gagggcccaagttcatgtcccagaggcgcatcatgtccgaagaaacacgtcttgcccata
ttccataacaagatcgtttgtaagcactggttacgtggattgtgtaaaaagaacgaccaa
tgtgaatatctacacgagtacaatttacgtaagatgccagaatgtgttttctattcgaaa
aacggctactgtactcaaacacccgaatgtcagtatctacatatagacccacagtcaaag
attgcgccctgcgaggaatacacaatgggattttgtccacagggtccaaattgcaaaaaa
cgtcatgtgaagaaagtgttatgtccgcgctacttaaccggattttgtcctttgggtaga
cgtgattgtgatatggcacatccatcatttgtagtgcctggtgacttgagtaagttgaga
atcaagaaggatgaagaaataaatacgaggaagtcggatgctgagaaggaaagaagactg
aatgcaataattaatggtgaaatacctgcatag
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