KEGG   Zygosaccharomyces rouxii: ZYRO0D05038g
Entry
ZYRO0D05038g      CDS       T01118                                 
Name
(RefSeq) RNA-processing protein PTA1
  KO
K06100  symplekin
Organism
zro  Zygosaccharomyces rouxii
Pathway
zro03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zro00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    ZYRO0D05038g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zro03021]
    ZYRO0D05038g
   03019 Messenger RNA biogenesis [BR:zro03019]
    ZYRO0D05038g
Transcription machinery [BR:zro03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     ZYRO0D05038g
Messenger RNA biogenesis [BR:zro03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     ZYRO0D05038g
    U7-dependent histone pre-mRNA processing factors
     ZYRO0D05038g
SSDB
Motif
Pfam: SYMPK_PTA1_N Ipi1_N
Other DBs
NCBI-GeneID: 8203904
NCBI-ProteinID: XP_002496652
UniProt: C5DVA0
LinkDB
Position
D:422014..424338
AA seq 774 aa
MAFPEVEQLQQARRLAMENNPNELLPKVLETSGSLYLSQGTSYALKLELSRFFSQLLLQI
LSDCDFPTSEKPFVAQQQLRCLWSIIRSIRDGTAYKYSVLSLSAAYPLLFDLVAKTSNKE
TWELMQQMKSFIVQRWNTPFPETPIANENDMFADDAKSMGVRLATAKFIAEIVIVHTSRS
SSSPNDVISISSVPEGHPVISNKQQIESEAKKFLDVLLNYLVEEPIMVAPLFSGILNCLA
FVMRHRPQATMRILGALLNFNVDAKFQQEGTSILNYRLSKRFVERSYKNFVQFGLKSQLI
KNHGSMAPLHARLSKISKTLHVIGEETRSKGVLNFDESQFDNKMTPKDKQKYTSLRKRQQ
RQLQSQPQPPTQQQLPQQIQPQRGSASNSPAPNSTPQLVQEALQQQPEQVPNDIQLLSHL
QKYTMSKNTPNFFNGSPIAIDNSYCAIYSLMNSNNSGQDVSKLSQEVMVKLCSEAFYNTD
TTKLISGLSIVASRYTDLINKSTQSRTGVEQSSDASGSRKRKSEQDSPPSKRLKNEEPHD
QDDEDREDAIPLELTQSASLTEDEKMRHVQGIVQRIVAIKDSDENPGVAGMLGHDTDPLM
KIKLLQWNQNSWLHLLTRLATRGLTHNPAMCDLIREWLQEQFLQDISNRIGMVLEWLSEE
WYAETLVGATSYETYNKWSLSVLNSLVPFLENQHRRLFIRLMSELPRITQAHIDTVRPIC
LDPARASLGFQTLKFLVMFRPPVKPKVHSLLLQLKSEDPTTSQNVDSIISKFYT
NT seq 2325 nt   +upstreamnt  +downstreamnt
atggcctttcctgaagttgagcaattgcagcaagctcgtaggcttgctatggagaataat
cctaatgaattgttaccgaaagttctagagacttcaggttcactttacttgtcacaggga
acttcttatgcattaaaacttgaattatcaagattcttttcacagctgcttctacagatt
ctttcagattgtgattttcccactagtgagaaaccatttgtagctcaacaacaattacgg
tgtctttggtcgattattagatcaattagggatggaactgcttacaagtattcggtttta
tcgttatcagctgcatacccactcttatttgatctagttgccaaaacgtctaacaaggag
acttgggaattaatgcaacagatgaaatcttttatagtacaacgttggaatactccattc
cccgagacaccaattgccaatgaaaatgatatgtttgcagatgatgccaaaagcatgggg
gttagattagctacagcaaaatttattgcagaaattgtcattgttcatacttcaagatcg
agcagtagtccgaatgacgttattagcatttcatcagtgccggagggacatcctgtgatt
tcaaacaaacaacaaatcgaatctgaagctaaaaaatttttagacgttttactcaattat
ctggttgaagaaccaataatggtcgcaccactcttctctggtatactaaattgtcttgcg
tttgtcatgcgtcatagaccgcaagcaacgatgagaatactgggggcacttttaaatttt
aatgtcgatgcaaaattccaacaagaaggcacatcgatattgaattatcgattaagtaaa
agatttgtggagcgctcttataaaaatttcgttcagtttggtcttaaatctcaattaatt
aaaaatcatggtagcatggcaccgttacatgcaagattatccaaaatttcaaagacttta
catgtaattggcgaagaaactcgaagtaaaggtgtattaaactttgatgaatctcaattc
gataataaaatgacacccaaggacaaacagaaatatacttcactgagaaaacgtcaacag
cggcaactacagtcacaaccacaaccaccaacacaacagcaactaccacaacaaatacag
ccacagagaggtagtgccagtaactcaccagctcctaattcgaccccacaactagttcag
gaagcgcttcaacagcaacctgaacaggtgcctaatgatatacagctcttgtcacatttg
caaaaatacacaatgtcgaaaaatactcccaatttcttcaacggatcaccgatagccatc
gataattcttattgtgctatctactccttgatgaatagtaacaattcaggtcaagatgtt
tccaaattatcacaagaagtcatggtcaaactatgcagtgaagcattttacaatacagat
acaacgaaattaatttcaggtctatcaattgtagcatctcggtacacagatctaatcaat
aaatcaacacaatcgagaacaggcgtcgaacagagctctgacgcaagcggcagccgtaag
cgtaaatccgaacaagattcaccacctagtaaacgtttgaaaaatgaagagccccacgat
caagatgatgaagaccgcgaagatgctatcccattggaattgacacaatctgcttctctt
acggaagatgagaagatgcgccacgtacagggaattgtccaaagaattgttgccatcaag
gactctgacgaaaatccgggtgtggcaggcatgctgggtcacgatactgatccattgatg
aagatcaaactgctccaatggaaccaaaattcttggttacatcttttaacgaggttggca
actcgtggattaactcacaatcctgctatgtgtgatttgataagagaatggttacaggaa
cagtttctacaagacatttcaaaccgtataggaatggtcctcgaatggctaagtgaagaa
tggtatgcagagactctcgttggtgctacttcctacgaaacttacaacaaatggtcccta
agcgtcctcaattccttagtaccattcttagagaaccagcaccgtcgtcttttcataaga
ttgatgagtgaactccccagaatcacacaagcacatatcgatacagttaggccgatatgc
ttagatccagcaagagcttcactaggtttccaaactttaaaatttctagtaatgttccgt
ccgccggttaagccaaaagtacactcattattgctacaactaaagagtgaagaccccaca
acttctcaaaatgtcgatagcatcataagcaaattctatacttaa

DBGET integrated database retrieval system