KEGG   Zygosaccharomyces rouxii: ZYRO0F16104g
Entry
ZYRO0F16104g      CDS       T01118                                 
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
zro  Zygosaccharomyces rouxii
Pathway
zro03013  Nucleocytoplasmic transport
zro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ZYRO0F16104g
  09122 Translation
   03013 Nucleocytoplasmic transport
    ZYRO0F16104g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zro03019]
    ZYRO0F16104g
   03041 Spliceosome [BR:zro03041]
    ZYRO0F16104g
Messenger RNA biogenesis [BR:zro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     ZYRO0F16104g
Spliceosome [BR:zro03041]
 Complex C
  Other components
   EJC/TREX
    ZYRO0F16104g
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ZYRO0F16104g
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd EIF3I WDR55 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 WD40_Gbeta Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_IFT122_2nd ASA1 Nucleoporin_N RMC1_N DapH_N Beta-prop_BBS7
Other DBs
NCBI-GeneID: 8205673
NCBI-ProteinID: XP_002497901
UniProt: B2G494 C5DYV7
LinkDB
Position
F:complement(1322975..1324183)
AA seq 402 aa
MNSNVVNGYCEKLVSGMLNKQHVEAIEDDRYSHVVSRSQSRFAAPISSNRILNLEFHPSG
HYMAYSREDGSLTVWRLANVSFARSKKMVIPNAMSRWVSWNHQEISEFATCSGNHELYIW
GVDEKKREIVKLRTLSSGNKNNKIERCIFDAQGRWLLSQQGLVLQFWDVKSDYQLKQSYQ
LDELEANVSDDDVITAVVWTNSGSHVIVGLNSGKMCILQVGEDSVRPLLFIEAHRSAITS
MVMDPWGEKLITGGADGSCNIWGLATMCCEKTIDKHSRICCMDVDPSGKILAVTTADNTV
QFYDTNELQLLASQNLKTTESDPLIKFYPDKSWFILSGKDDSIERHFTPGNYNDLISFYK
VENERRNSRSRIQRKPIKKDSKERARVSKWDLPKTSRFNDRF
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgaatagcaacgtagtcaatggttactgtgagaaactggtcagtggtatgctgaacaag
cagcatgtagaagctattgaggacgataggtattcgcatgtggtatctcgatcgcagtcg
agatttgcagcacccatttcatctaatcgtattttgaatttagaattccacccttcgggt
cattacatggcctatagtagagaggatggatcgctgacggtctggaggctcgccaacgta
tcatttgcacggtcaaagaaaatggtcataccgaatgctatgtctcgttgggtttcttgg
aatcatcaggaaatctcagagtttgctacttgtagtgggaatcacgaactgtacatatgg
ggggttgatgagaaaaagagagaaattgtcaagttgagaactttaagctcaggtaacaag
aacaacaagattgagagatgcatatttgacgctcaaggtcgttggttgctatctcaacag
ggtcttgtgctgcagttttgggatgttaaatcggactatcagttgaagcagagttatcaa
ttggatgagcttgaggctaatgttagcgatgatgatgtgattacggcagtggtttggacc
aattcgggttcacacgtgatcgtagggctcaacagcggtaaaatgtgtatattacaagtg
ggggaagattcagtgcgaccattgttattcatagaagcccacagatcagccattacttcc
atggtgatggatccctggggagaaaaattgattacaggaggtgcagatggtagttgcaac
atatggggattagcgacgatgtgttgtgaaaaaacaattgataaacactctcgcatatgc
tgtatggatgtggatccgtcgggcaagattttagctgtgaccacagccgataatactgta
cagttttatgatactaatgaactacagttgttggcatcacagaatttgaaaacaacagaa
tcagatccattaattaaattttatccagataagtcgtggttcatactctctggtaaagac
gattccatcgaaagacattttacaccaggtaattataacgacttaatttcgttttacaaa
gtggaaaatgaaagaagaaactctcgcagtcgtatccaaagaaaaccaattaaaaaggac
tcgaaagaacgtgctagagtctcgaaatgggatctccccaaaacaagtaggttcaatgat
agattttaa

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