Zhouia spongiae: MQE36_05155
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Entry
MQE36_05155 CDS
T08031
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
zsp
Zhouia spongiae
Pathway
zsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MQE36_05155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zsp03019
]
MQE36_05155
03016 Transfer RNA biogenesis [BR:
zsp03016
]
MQE36_05155
Enzymes [BR:
zsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MQE36_05155
Messenger RNA biogenesis [BR:
zsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MQE36_05155
Transfer RNA biogenesis [BR:
zsp03016
]
Prokaryotic type
tRNA degradation factors
MQE36_05155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
S1CSD-TOTE-2
WHD_GDS1
Motif
Other DBs
NCBI-ProteinID:
UNY99733
UniProt:
A0ABY3YQ12
LinkDB
All DBs
Position
complement(1183425..1185680)
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AA seq
751 aa
AA seq
DB search
MSKRKKRADKQRKVEITKGIFSVLEKNKNQPLNYKQIASKLGINDTGGRNLLIKRLGQLK
AKEKIEEVERGKYRVIPSQNYYTGIVDITGRGNAYVICDDLENDVFIPSSLLSKALHGDE
VEVYVFPRRRGSKRLEGEITKVINRKRTTFVGIVQMQKNFAFVVPGDFRMYTDIFVAKNK
INNAEDGDKVLVEITDWPDKAESPYGKIIKVLGKPGEHQTEMHAILAEYGLPYEFPGDVE
HFANQLDTSIQETEIKKRRDMRGITTFTIDPRDAKDFDDALSFQVLENGNYEIGIHIADV
SHYVQPGSVLDDEAYNRATSVYLVDRVVPMLPEILSNNACSLRPHEEKYTFSALFEMDKN
AGVINQWFGRTVTYSDQRFAYEEAQHIIENYHLSETEGALKVFSNDDERSAKVMIPEDLS
ITEKEYEVAPMVSLAILVLDDLAKKMRHRRMDAGAISFDKVEVKFRLNEENDPMGVYFKE
AKDSNKLIEEFMLLANRKVAEFIGKQKKTFVYRVHDEPDDEKLIQLNGVISRFGYSVNLK
SRKTITSSLNQLLEEVQGKKEQNLVDTLAIRSMSKAEYTTENIGHYGLAFDYYTHFTSPI
RRYPDVMVHRLLQYYIDGGASAKEEEYQEKCRHSSQMESLAANAERDSVKYMQIKFMEDH
KNQDFIGVISGVTEWGIYVEIIENKCEGMVRIRDIKDDYYVFDDQQYALVGEVTKSMYQL
GDEVIVKVKNTDLIKRHLDFELLGKKEDVLV
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagaaagaaaagagctgataagcagcggaaggtagaaatcacaaaaggaatt
ttttccgtattagaaaagaataaaaatcagccacttaattataaacaaatagcttctaaa
cttggtataaatgataccggcggaagaaatttattgattaagcgtttaggccagttaaag
gccaaagagaagattgaagaagtagagagaggaaagtacagggttataccatcgcaaaat
tattataccggtattgtcgatattaccggcaggggaaatgcttacgtaatatgcgatgat
cttgaaaatgacgtctttattccatcttccttactaagcaaggcacttcatggagatgag
gttgaagtgtatgtgtttccaagaagaagaggttctaaaaggctggaaggtgaaataaca
aaagtgattaacagaaaaagaaccacttttgtcggtatcgtacagatgcaaaagaacttt
gcttttgtagtgcccggtgattttagaatgtataccgatatttttgttgccaagaacaaa
ataaacaatgctgaggatggtgataaagtattggttgaaataaccgattggcctgacaaa
gctgaatctccttatggtaagattattaaagttttaggaaagccaggtgaacatcagacc
gaaatgcatgctattctggctgaatatggattgccttatgagtttccgggagatgtagaa
cattttgctaatcagttagatacatccattcaggaaactgaaatcaagaaacgccgggat
atgcgtggaattacgacttttacgatagacccaagagatgcaaaagattttgacgatgcc
ttatcatttcaggttttagagaatggtaactatgaaataggtattcatatagccgatgta
tcacattatgtgcaaccgggttcggttttagatgatgaagcttataatcgcgctacttct
gtatatctggtagacagggtggtacccatgttaccggagattctgtcgaataatgcctgt
tcgttaaggcctcatgaagagaagtatactttttccgccttgtttgaaatggataaaaat
gcaggagttatcaaccagtggtttggcagaacagtaacatactcagaccagcgttttgct
tatgaagaagctcagcatattattgaaaactatcacttgtcggagacagaaggtgcgctt
aaggttttttctaatgatgacgagaggtctgcaaaagtcatgattcctgaagatttatcg
ataacggaaaaagaatatgaggtagccccgatggtttcgctggccatactcgtattagat
gatctggccaaaaagatgcggcacagacgcatggatgccggagccatatcgtttgataag
gtagaggtaaagtttcgtttaaatgaagagaacgatccgatgggcgtttattttaaagag
gctaaggattctaacaagcttattgaagaatttatgctgttggctaaccgtaaggtggcc
gaatttataggaaagcaaaaaaagacatttgtttaccgggtgcatgacgaaccggacgac
gaaaaactaatacagttaaacggcgtaatatcacgttttgggtatagtgttaacctgaag
agcagaaaaaccattacaagctctctaaatcagttactcgaagaagtacagggtaaaaag
gaacagaacctcgtagatacactggccatcagaagtatgagcaaggcggagtacaccaca
gaaaatatagggcattacgggctggcttttgattattacacccattttacttctccgatc
agacgttatccggatgtaatggtacaccggttgctacagtattatatcgacggtggggca
tctgccaaagaggaagagtatcaagaaaaatgcaggcattcttcacaaatggaaagtctg
gcagccaatgctgaacgggattcggtaaaatatatgcagattaaatttatggaagaccat
aagaaccaggattttatcggagttatttctggtgttaccgagtggggtatttatgtggag
atcatagaaaacaaatgcgaaggcatggttaggataagggatattaaagacgattattac
gtatttgacgatcagcaatatgctttggttggtgaagtaactaaaagcatgtatcaactg
ggtgatgaggtgatagtgaaagttaaaaatacagatcttatcaagcgtcatcttgatttt
gaattacttggcaaaaaagaagatgttttagtttaa
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