Zymoseptoria tritici: MYCGRDRAFT_109995
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Entry
MYCGRDRAFT_109995 CDS
T02285
Name
(RefSeq) hypothetical protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ztr
Zymoseptoria tritici
Pathway
ztr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MYCGRDRAFT_109995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ztr03019
]
MYCGRDRAFT_109995
Messenger RNA biogenesis [BR:
ztr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MYCGRDRAFT_109995
U7-dependent histone pre-mRNA processing factors
MYCGRDRAFT_109995
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Glypican
MutS5_N
Motif
Other DBs
NCBI-GeneID:
13402007
NCBI-ProteinID:
XP_003851630
JGI:
Mycgr3_109995
UniProt:
F9XE80
LinkDB
All DBs
Position
6:<2340075..>2344314
Genome browser
AA seq
1108 aa
AA seq
DB search
MFNFTALLGAQSDSPASQSLLELDGGVKLLVDVGWDETFDAEKLQTLEKHVSTLSVILLT
HATVEHIGAYAHCCKHIPAFNKIPVYATTPVINLGRTLIADIYASSPLAASVIPTSSISS
SPVALAPESTPNLLFQPPTADEIASYFNLIHPLKYSQPHQPIPSPWSPSLGNLTITAYSA
GHTIGGTIWHIQHSMESIVYAADWNQGRENLLSGAAWLGSTSGGAEIIEALRRPTALICS
SKGVEKTDTMPRKKRDETLVGLIRDTIAQGGKVLIPTDSSARVLELAFVLNQNWKENING
PHADTYRHAKIYMASKTSSSTVRQLQGMLEWLDESIIRDAEVAMGQQQVENQKVPTLLDW
RFVKQIERKSQFDRALKRSSPCILLASDASLEWGFSRSALESLASDSRNLVVLTETVSHG
KSASPSLAAQLAKCWQERSSGKSGARVVGAEGHEVSLRNYAVETLDGDENMLYQQYIARQ
RQLHSSLQGDNTANDAVTTEIADDQASESSESEDEDEDTEHQGRALNLSAQMTQTNKRKV
GLSDAELGINVLLRSKNIHDFDVRNKRGREKMFPFVAHRAKADEYGDIIRPEDYLRAEER
DDVDGVDMRETVKQEAPAVGQKRKWDDAATLNGPGGKGRRSLKQEPNKRTKAEEPKEPRQ
PDDIDALIAKATGEGEGAANGDEESDGESDYEPEDAAADGPQKIVFTTQTVALHLRIAHV
DFSGLHEKRDLQMLIPLIRPRKLILISGSMSETQTLAEDCRQLLAGDGNSTDVFAPIIGE
MVDASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRLEAEEVETDEVADQGDKKKLK
LIKNEKEEDTKMTGLEARPSMPVLDLVNMMAAGGVGVVHHRATQPVHVGDLRLADLRNLM
RESGHTAEFRGEGRTTYNSPPLPAGYAHQVFYPNFGAVASAEPADRSHILPPAQPGVTVA
NGCTTWNGTTWTAPVTQPAAGSQAPPALAPGVNYMFPPAHTMLHVFNKGAPIWEDKYKGQ
GLAFKIFKVSTQYSVKEVVERVMGAGDDKDKCKDWACTEVVECGDGRWIKGTTIPYKDDK
AKGNLASMGWTEKRGQGLPPVWLVVHKP
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacttcacggcgttgctgggcgcgcagtccgactcgcccgcttcacaatcgtta
ctcgaactcgacggaggtgtcaaactgctggtggacgtcggatgggatgagacctttgat
gcggaaaagttgcagaccttggagaagcatgtgtcgacattgtcagtgatactcctgacc
catgcgaccgtggagcatattggagcatacgcgcattgctgcaagcatattccggctttc
aacaaaattcctgtctacgcgaccacgccggtcatcaacctcggacggacactcatcgcc
gatatctacgcgtcttcgcctctcgccgcttctgtaataccgacatcatccatatcctcc
tctccagtagcacttgcgccggagtctaccccaaatctcctcttccagcctccaacggct
gacgaaatcgcctcatacttcaacctcatccatcctctcaagtacagccagccacatcag
ccaatcccatcgccatggtcaccctcgctcggcaatctcacgattacggcatacagtgca
ggacacacgatcggtggtacaatatggcacattcaacacagcatggagagtattgtgtat
gcggcagactggaatcaaggtcgcgagaatctgctctcaggtgcagcatggctggggagt
acttcaggaggggctgagattatcgaggcgctgcgtcgaccgacagcattgatatgcagc
tcgaagggcgtagagaagacggacaccatgccacgaaagaagagagacgagacattggtc
ggtttgatcagagatacgatcgcgcaagggggcaaagtcctcataccgacagactcatct
gctcgagttctagaattggcatttgtgctcaatcagaactggaaggaaaacatcaacgga
ccccacgcggatacgtatcgacatgcaaaaatatacatggccagtaagactagctcgagt
accgttcgtcaactgcaaggaatgctggagtggctagatgagtctattattcgagatgcc
gaggtggctatgggtcagcagcaggtggagaaccagaaggtgccgacgttgctggactgg
cgtttcgtcaagcagattgagaggaagagtcagttcgatcgagcattgaagaggtcgagt
ccttgtatcctgcttgccagtgatgcttcgctagaatggggattctcgagatcagctctg
gagagcttagcatcagattctcgaaacttggtcgtgcttaccgagaccgtctcccacggc
aagtcggccagccccagtctggcagcacaactggcaaagtgttggcaggagcggtcatca
gggaaatctggcgcgagagtggtcggagcagagggtcatgaggtgtcgctacgaaattat
gctgtggaaacgctcgatggagacgagaacatgttgtaccagcaatacattgctcgccaa
cgacagctacatagtagcctacaaggtgacaatacagccaatgatgcggtcaccactgag
attgcagatgatcaagcctcagaatcgtctgaatcagaagatgaggatgaggacaccgag
catcaaggtcgcgcactgaacctttcggcacagatgacgcaaacgaataagcgtaaagtc
ggcctctcagatgctgagctcggtatcaatgtcttgttgcggagtaaaaacatccatgac
tttgatgtgagaaataagcgcggaagagagaagatgtttccattcgtggcacatagggca
aaggcagatgagtatggagacatcatcaggcctgaggactacctccgcgcagaggaaaga
gatgatgttgatggtgttgatatgagggaaaccgtcaagcaagaagcaccagctgtcggc
caaaagaggaagtgggatgatgccgccaccttgaatggtcctggcgggaaaggacggagg
tcgctcaaacaagagccgaacaagcgaaccaaagctgaggaaccaaaggaaccacgacag
cctgacgacatcgacgctctgatcgccaaagccactggcgaaggcgaaggcgctgcgaat
ggagacgaagaaagtgatggtgaaagcgattacgagcccgaagatgcggccgccgatgga
cctcaaaagattgtcttcacaactcaaactgtcgctttgcatctccgcattgcacatgtc
gacttctctggactgcacgaaaagcgagacttgcagatgttgattcctcttattcgaccg
cggaagctcattctaatttcgggaagcatgtccgagacgcagacactcgcagaagattgc
agacaactcctcgcaggcgatggcaactcgaccgatgtcttcgctccaatcatcggcgag
atggtcgatgctagcgttgacacaaacgcgtggaccctcaagctgagccgacagctcgtc
aagaagctcacatggcagaacgtaaaaggcttgggggttgtggctctgacagggcgcctg
gaagcggaagaagtagagacagatgaagtcgcggatcaaggcgacaagaagaagctcaag
ctcatcaagaatgaaaaagaggaagacacgaagatgacaggtctcgaggccaggccttcg
atgcctgtcctcgatcttgtcaacatgatggctgccggcggcgttggtgtagtccatcac
cgcgccacgcagcctgtgcacgttggagatctgcgcctggcagacctgaggaacctcatg
cgggagtctggacacacggcagagttccgtggcgagggtcgaacaacctacaacagccca
cctctccccgccggctacgcacaccaagtcttctaccccaacttcggagccgtcgcatca
gccgaaccagcagatcgctctcacatcctaccaccagcacagccaggcgttaccgtggcc
aacggctgtacgacttggaacggtacgacttggaccgccccagtcactcaacccgccgcc
ggctcccaagcacctccagcactagcccccggcgtcaactacatgtttcctccggctcac
acgatgttgcatgtgtttaacaaaggcgctccgatctgggaggataaatacaaaggccaa
ggactggcgttcaagatcttcaaagtcagcacgcagtattccgtgaaggaggttgttgag
agggtgatgggtgcgggcgacgacaaggacaagtgcaaggactgggcgtgcacggaggtg
gtggagtgtggagatgggaggtggatcaagggcacgacgattccgtacaaggacgacaag
gcgaagggcaatttggcgagcatggggtggactgagaagaggggtcagggattgcctcct
gtgtggttggtggtgcacaagccttga
DBGET
integrated database retrieval system
