Zymoseptoria tritici: MYCGRDRAFT_111559
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Entry
MYCGRDRAFT_111559 CDS
T02285
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ztr
Zymoseptoria tritici
Pathway
ztr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCGRDRAFT_111559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ztr03019
]
MYCGRDRAFT_111559
03041 Spliceosome [BR:
ztr03041
]
MYCGRDRAFT_111559
03009 Ribosome biogenesis [BR:
ztr03009
]
MYCGRDRAFT_111559
03016 Transfer RNA biogenesis [BR:
ztr03016
]
MYCGRDRAFT_111559
Enzymes [BR:
ztr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCGRDRAFT_111559
Messenger RNA biogenesis [BR:
ztr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MYCGRDRAFT_111559
Spliceosome [BR:
ztr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MYCGRDRAFT_111559
Complex C
U4/U6.U5 tri-SnRNP related factors
MYCGRDRAFT_111559
Ribosome biogenesis [BR:
ztr03009
]
Eukaryotic type
Pre-60S particles
Helicases
MYCGRDRAFT_111559
Transfer RNA biogenesis [BR:
ztr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MYCGRDRAFT_111559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Helicase_dom4_arc
Imm47
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
13402084
NCBI-ProteinID:
XP_003848028
JGI:
Mycgr3_111559
UniProt:
F9XP84
LinkDB
All DBs
Position
12:1311904..1315342
Genome browser
AA seq
1083 aa
AA seq
DB search
MDELFDVFSEAPGKRNANEEREKKSKKRSLNGDVKNGSDAPMSDALDEENGAADRDEEQG
DDASEDRNQKRQRREDEPSAVVTDTFETEQSREVAAAAGLQGQKDDKAVVLSHQVRHQVA
LPPDSDYIPISQHKRPEKPARTWPFTLDPFQEVSISSIERNESVLVSAHTSAGKTVVAEY
AIAQCLKNNQRVIYTSPIKALSNQKYREFQAEFGDVGLMTGDVTINPTATCLVMTTEILR
SMLYRGSEIMREVAWVVFDEVHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFA
EWIVKTHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLIVDEKGTFREDNFNKAMAAIADK
AGDDGTDPMAKRKGKGKDKKINKGGRKDGPTDIYKIVKMIMMKNYNPVIVFSFSKRDCEN
YALQMSQLAFNDESEKAMVSKVFSSAIEMLSDEDKELPQIQHLLPLLRRGIGIHHSGLLP
ILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGISLRYVTPSEFIQMS
GRAGRRGLDERGIVIMMIDEKMEPVAAKDIVRGEQDKLNSAFYLGYNMILNLMRVEGISP
EFMLERCFYQFQNAASVNGLEKQLVELEQKRLDMIIPNEGEVKEYYDLRQALTNYATDMR
EVITHPQYLLKFLQAGRLVKIKYKDYEFGWGVVVNFMKVKPARGQKEEDIKASQSVVVDV
LMSVAVDGATPQVGAKLTEDLPPGVRPPAPGEKGKMEVVPVMNGTIDSIGHIRVFLPNDL
RTQEQRNTVRKSLEEVSKRFPDGIAILDPIENMGINDEGFKKLLRKIEVLEHKMLNHSLH
NSDALPALYDQYHTKVLLSNEIKDTRKKINDALSVLQLDELKNRKRVLRRLTFVNDQDVV
QLKARVACEISTGDELVLSELLFNGFFNDLQPEVCAAVLSVFIFEEKSDDPPNLKEELAK
PFREIQAQARTIAKISMESKVLVNEEEYLQGFKPQLMEVVYAWTNGASFATICKMTDVYE
GSLIRLFRRLEELLRQIAQAAKVMGSEELEQKFELALTKVRRDIVAAQSLYLLSRGAHAL
DVR
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggacgagctattcgatgtcttcagcgaggcccctggcaagcgcaatgcgaatgaggag
cgggagaagaagagcaagaagaggtctctgaatggcgatgtaaagaatggcagtgatgcg
cctatgtcagatgcgctggacgaggagaatggcgctgcggatcgagatgaggagcagggt
gacgacgcatcagaggaccgcaatcagaagcgtcaacgccgagaggacgagccatccgca
gtggtgaccgataccttcgaaactgaacaatcacgagaagtcgcagcggcggctggtcta
caaggtcaaaaggacgacaaggcggtcgtgctttcacatcaagtgcgccatcaagtcgca
ttaccgccggacagcgactacattcccatctcacaacataagcgacccgagaagcccgcg
cgaacgtggcccttcactttggatcccttccaagaggtgtcaatatcatctatcgagcgg
aatgagagtgtgctggtatcggcgcataccagtgcgggaaagacggttgtggcggagtat
gcgattgcacagtgtttgaagaacaaccagagagtcatctacacaagtccgatcaaggct
ctgagcaatcagaagtaccgcgagttccaggcggaatttggcgatgttggtctgatgact
ggagatgttaccatcaatcccacagcgacctgcttggtcatgacgaccgagattctacga
tctatgttgtatcgaggcagcgagatcatgcgagaagtggcgtgggtggtgtttgatgag
gtgcactacatgcgcgacaagactcgtggtgtggtctgggaggagacgatcattctgctg
cccgacaaggttcgatatgtgttcctctccgccacgattcccaacgccatgcaattcgcc
gagtggattgtcaagacgcacaaccagccctgccacgtggtatacaccgatttccgaccg
acacctctacaacactacttcttcccagccggagccgacggcatccacctgatcgtcgac
gagaagggcacatttcgagaagacaacttcaacaaggccatggccgcgattgccgacaaa
gctggagatgacggtacagatcccatggcgaagcgaaaaggcaaaggcaaggacaagaag
atcaacaaaggagggcgaaaagacggaccaacggatatctacaagatcgtgaagatgatc
atgatgaagaactacaatcctgtcattgtcttctcgttctcgaagcgtgattgcgagaac
tatgctctgcagatgagccagctcgctttcaacgacgagtcggagaaggctatggtgtcg
aaggtcttctcttctgcgatcgagatgctgtcggatgaggacaaggagctgccacagatt
cagcatctactgccacttctgcgacgaggtatcggcattcaccattctggtctactcccg
attctgaaggagacgattgagattctgttccaagaaggtctgatcaaggtcctcttcgca
acagagaccttctccatcggtctgaacatgcccgcaaagactgtcgtcttcacatctgtg
cgcaaattcgatggcatctcattacgatacgtcacacccagcgagttcatccaaatgtct
ggacgtgctggacgaagaggtctcgatgagcgtggtattgtcatcatgatgatcgacgag
aagatggaacctgttgcggcgaaggacattgttcgtggagagcaagacaaactaaacagt
gctttctacctcggatacaacatgattctcaatctgatgcgagtggagggcatcagtccg
gagtttatgcttgagcgatgtttctaccaattccagaacgcggcttctgtcaatggactg
gagaagcaattggtcgagcttgagcagaagaggctggatatgatcattccaaatgagggc
gaggtcaaggagtattacgatctgcgacaggctctgacgaattacgccacggacatgcgc
gaggtcatcacacatccccaatatctcctcaagttcctgcaagctggtcgcctggtcaag
atcaagtacaaggactacgagttcgggtggggtgttgtggtcaacttcatgaaggtcaag
ccggctcgcggtcagaaagaagaggatatcaaggcttcgcaatcagtcgttgtcgacgtc
ctgatgagcgtcgcagtcgatggcgcaacaccccaagtcggcgcaaaactgaccgaagac
ctcccacctggcgtccgaccccctgcacccggcgagaagggcaagatggaagtcgtcccc
gtcatgaacggcacaatcgacagcatcggccacatccgcgtcttccttcccaacgacctc
cgcacgcaagaacagcgcaacaccgtccgcaagtccctcgaagaagtctctaagcgcttc
cccgacggcatcgccatcctcgacccgattgaaaacatgggcatcaacgacgaaggcttc
aaaaaactcctccgcaaaatcgaagtcctcgaacacaaaatgctcaaccactccctccac
aactccgacgccctccccgctctttacgatcaatatcacaccaaagtcctcctctcgaat
gaaatcaaagatacccgcaagaaaatcaacgacgccctctccgtgcttcaactcgacgaa
ctcaagaaccgcaagcgcgtgctccgccggcttacattcgtcaacgaccaggacgtcgtg
caactcaaagcccgcgtcgcgtgtgagatttccaccggtgacgaactcgtgctcagcgag
ctgctcttcaatggtttcttcaatgatctccaaccggaagtctgcgctgctgtgctgtca
gtgtttatcttcgaggagaagagcgacgaccccccgaatctgaaggaggaactcgccaag
cctttccgtgagatccaggctcaggcgaggacgattgcgaagatcagtatggagagtaaa
gtcctggtgaatgaggaggagtatctgcaggggttcaagccgcagctgatggaggttgtt
tatgcatggactaatggagcgagttttgcgacgatctgcaaaatgacggatgtctatgaa
ggcagtctgattcgcttgttccgtcgactggaggaactgctgagacaaatcgcgcaggcg
gcgaaggttatgggctcggaggaattggagcagaaatttgaacttgcgctgacgaaggtg
aggagggatattgtggcggcgcagagtttgtatttactttctcgcggtgctcatgccctc
gatgttcgctaa
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