Zymoseptoria tritici: MYCGRDRAFT_36290
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Entry
MYCGRDRAFT_36290 CDS
T02285
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ztr
Zymoseptoria tritici
Pathway
ztr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MYCGRDRAFT_36290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ztr03021
]
MYCGRDRAFT_36290
03019 Messenger RNA biogenesis [BR:
ztr03019
]
MYCGRDRAFT_36290
Transcription machinery [BR:
ztr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MYCGRDRAFT_36290
Messenger RNA biogenesis [BR:
ztr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MYCGRDRAFT_36290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Pfc11_Clp1_ID
VHS
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
13400477
NCBI-ProteinID:
XP_003855218
JGI:
Mycgr3_36290
UniProt:
F9X4Z4
LinkDB
All DBs
Position
2:3745055..3747143
Genome browser
AA seq
657 aa
AA seq
DB search
MSSHSPRGSLSGASTSAEVAADFEESLKDLQVNNRYEISNLTIIAKENTEHAQAISRALE
NHIKTTSPSRKLPALFVLDSIVKNVGTPYTVYLGRNLYSIFMDAYTLVDGNTRRNMEGML
KTWKERVPGAIDPRPVFPADTVRPIENALLKAKTAALQSQRPPHGQPQGAYRATATPPQH
NGQYHPPPQAHQQHPYGMQQPTPQPQQYPPSQPSYQEVEAVKRDIDMLIQTFQRQLAPNP
HDPRLRSQLAALQALHEFLSTKSVSAMEFQSIKAQVSSMTPALAAPQPPPQPPTPQWQTP
AQYPPYQQPPTGFQPPQSFTPQTNGPPAPAPNPLAGLQALLANAPKPSTPQLRAAMPDLQ
NASHSQMNSLQNHAAAPSVNGAADLIASLTKAGLINVGPNSTPLPPSAPPAASAPPADPT
AALLKSLQSILPTQPPQGAAPQLAMPPMGATSQVPISAASLKVFRPELIYKLYDGQPNQC
STCGRRFLATEEGRQEKNRHLDWHFRTNQRIADPALNRGHHRNWYVDEMEWIRHVEFDPS
TTTATAGDAQAAVKAKKGPQDQSVRAPAGMTKNTCNICFEEMKSSYSEDLQDWIFTNATV
HNGRIVHATCLAEMSKGQGGSGGAGGSRDRSATPDSLLGKRKAEQILVGGGARMKTE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccattcgccgagaggctcactctccggtgcatcaacgtctgctgaggtggct
gcggactttgaggaatcgttgaaagatctgcaagtcaacaacagatatgagatcagcaat
ctcacaatcatcgccaaggagaacacagaacatgcccaggccatctcacgtgcgcttgag
aatcacatcaaaacgacatcaccaagccgaaaactccctgccctcttcgtgctcgatagc
atagtcaagaacgttggcacgccgtacacagtctaccttggccgcaatctctacagcata
ttcatggatgcctacaccctcgttgacggcaatactcggagaaacatggaaggcatgctg
aagacgtggaaagagcgcgtgcctggagcgatagatccgcggcctgtatttcctgccgat
actgtgcggccgattgagaatgcgctcctcaaagcgaagactgccgctctgcaaagtcaa
agaccgccacacggacagccgcagggtgcatatcgcgccacagcgacacctcctcagcac
aatggtcaataccatccaccgcctcaggcacatcagcagcatccgtatggcatgcaacag
ccaacacctcagccacaacagtatcctccgtcgcagccgtcttaccaagaagttgaagcc
gttaagcgagatatcgacatgctcattcagacatttcagcggcaattggcaccaaacccg
cacgatccacgactgcgcagccagcttgctgccctccaggcgctgcatgaatttctcagc
accaagagcgtatctgcaatggagtttcagagcatcaaagctcaggtctcatcaatgaca
ccagcgttagccgcgccgcaaccccctccacagccgcctacaccccaatggcaaacacct
gcacaatatcctccgtatcagcaaccaccgactggattccagccgccgcagtcattcacg
cctcaaacgaatggccctcccgcgccggctccgaatccattggctggactgcaggcactg
ctcgctaatgcgcccaagccgagcacaccacagctgcgcgcagccatgcccgacctccaa
aacgcaagtcattctcagatgaactcattacagaaccatgcggcagctccaagcgtgaac
ggtgctgcagacctcattgcttccctcacgaaagcaggactcatcaacgtgggtccaaac
tcgacgccactaccgccaagtgctcctcctgcagcatcagcaccacctgcggatcccaca
gctgctctgctgaagtcacttcagagtattctacccacacagccacctcaaggagccgcg
ccgcagcttgccatgccaccaatgggtgcgacatcacaagtgcccatctccgcagcctca
ttgaaggtcttccggcctgaattgatctacaagctctacgacggtcaaccgaatcaatgc
agcacttgcggacgccgattcctcgccacggaagaaggtcgacaagagaagaaccgccat
ctcgactggcacttccgcacgaatcaacgtattgctgatccagcgctcaaccgtggtcat
caccggaactggtacgtcgatgagatggaatggattcgacacgtcgagttcgacccatcc
accacgacggctacggcaggcgacgcacaagctgcagtaaaggcgaagaaaggaccacaa
gaccagtctgttcgtgcaccggcgggcatgacgaagaatacctgcaacatctgcttcgag
gagatgaagagcagttactcggaggacttgcaggattggatcttcacgaatgcgacagtg
cataacgggaggatcgtgcatgcgacgtgtctggcggagatgagcaaaggacaaggcggt
tctggaggagcgggaggctcgcgagatcggagtgctacgccggactccttgttggggaag
aggaaggccgagcagatcctggtgggaggcggagcgagaatgaagacggagtga
DBGET
integrated database retrieval system
