Zymoseptoria tritici: MYCGRDRAFT_47983
Help
Entry
MYCGRDRAFT_47983 CDS
T02285
Symbol
DCL2401
Name
(RefSeq) dsRNA-specific nuclease
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ztr
Zymoseptoria tritici
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ztr03036
]
MYCGRDRAFT_47983 (DCL2401)
Chromosome and associated proteins [BR:
ztr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
MYCGRDRAFT_47983 (DCL2401)
microRNA pathway
RISC loading complex
MYCGRDRAFT_47983 (DCL2401)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
DSRM_2
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
Dicer_platform
Motif
Other DBs
NCBI-GeneID:
13402416
NCBI-ProteinID:
XP_003849619
JGI:
Mycgr3_47983
UniProt:
F9XK11
LinkDB
All DBs
Position
9:complement(1660747..1665410)
Genome browser
AA seq
1537 aa
AA seq
DB search
MSAPSDLLAEEDAEANDSGAEEDPLPPGAPVSLVEKRRLQKAVFEHWITTPACQEALKPK
HKDGKTKGIEDEEQSIHSLLAQQQKGVQIVKNPREYQIELFERAKKENTIAVLDTGSGKT
LIAVLLLRWMIDNELEDRAAGKPSRVSFFLVSSVTLVYQQHSVLECNLDHKVARLCGADN
VDRFNKSSWEKLFYENKVIVCTAEILFQCLSRSYITMKQINLLIFDEAHHAKQNHPFARI
VKDFYLTEPDATSCPRVFGMTASPIDAKTDVVQAASELETLLGCRIATTSDMSLAESIKK
PKECVLQYDALPQTGAETLLLQSLKARYGHVEVFNKTFEQATDISRVLGRWCADSHLVDA
LGSDKLKKLEATVERRFYARDRSQAADSEARQAELERQLKELRDAVAYVQEQATSTANLA
TVTADDVSSKVWSLRGHLDAQFERPSNHRCIVFVDQRYTARLLTRLFQKIGTKHLHSQFL
IGHGSGNADEGSFTFRQQVWTLLKFRKGVFNCLFATSVAEEGLDVPDCNLVVRFDMYKTM
IQYVQSRGRARNINSTFIHMLEMGNSIQTNLLNEVRHQEKAMRDFCNLLPADRKLDGNQD
GLNELLEKEKNTRTYTVPATGAKLTYGNALSILAHFVSAVPSDSDEPQHPTCVISVTGQK
FLAEVLLPGNSPIRSVLGRPEQRKQLAKCSAAFNACLELRKKEYLDAHLMPIYQKKLPAM
RNALLATGMDKTKGFAMQVKPKIWAEQRGIVPSQLWITLVDFPQGLDRPHRSFAMLTRSS
ILQLPKFPVFPSIGKSSDVVSASLSRPLEVTSQLLAKLTAFTLRIFLDVFSKTYEEDDAK
LSYWLVPTTIALHGDEASKDRIRSIDPREVIDWNLVESVFDNKEHKWTPGMPNDFLANKF
ITDPWDGSRKFYSKAVDGSLRQTDDLPSDVVPPRAKWTGKTIMDYSVRLWKNADKKSQWH
DNQPVIEAEKVLLRRNMLASPDQQEVSVSTKAYICPEPLRISAIPPELATSLLFWPAVIH
RIEAYLISIEGSASVGVACDPTFALAAFTKDSDNQGEHEAQERVNFQRGMGENYERLEFI
GDTFLKTATTISTFIQNPNDNEFEFHVRRMQMLCNKNLFEHALEYKLYEYIRSMAFNRRT
WYPEGMKLMAGTGVIKGQEKEMYHSEMTHVLGKKTIADVCEALIGAAFLTHNQPDEKWQP
HHWEPAIQAVTKLVKSDDHTMLTMDDYKAAYLLPDYQTAHVTAVQRDLAEKIQLEHAYSF
NYPRLLYSAFSHPSNPYMHAQVPNYQRLEFLGDALLDQASISYLFYKFPAADPQWLTEHK
MAMVSNKFLGALCVNIGFHKHLRHSHSSLGKQIHAYVDELVEARTSSGPDCRDYWTTVSD
PPKCLPDVIESFVGAMFIDSNFNFAEVQRFFEEHVKWYFEDMSIYDTFANNHPCTHLHQR
LQTGFGCMDYRLMAKELPNVEGGAERKDVVAVVMIHDRIVASSGGKSGRYARLRVANRAL
EVLDGLAPFEFREKFGCVCKGVEDSGEVITVGADCGV
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccatcagatcttcttgctgaagaagacgccgaagccaacgactcgggcgca
gaagaagacccactgccaccgggcgcaccagtcagtcttgttgagaagcgccgccttcag
aaggccgtgttcgagcattggatcaccacgcccgcctgccaagaagcattgaaacccaag
cacaaggatggcaagacgaaaggcatcgaggatgaagaacagtccattcactcactgctt
gctcagcaacagaagggtgtccagatcgtgaagaatcccagggagtatcaaatcgagctc
ttcgagcgcgcgaaaaaggagaacacaatcgctgtccttgacacaggctcgggcaagact
ctaattgctgttctgctgcttcgctggatgattgacaatgagctcgaagatcgagccgct
ggcaagccttcgcgagtttccttcttccttgtttcttccgtcacccttgtctaccagcaa
cactccgtcttggagtgcaatctggatcacaaggtcgcccgtttgtgtggtgctgacaat
gtcgaccgcttcaacaagtctagctgggagaagcttttctacgaaaacaaggtcattgta
tgcactgctgagattctgttccagtgtctttcgcgcagttacatcacaatgaagcagatc
aatctgctcatcttcgatgaagctcaccacgccaagcaaaatcaccctttcgccaggatc
gtgaaagacttctacctgacagagccagacgcaacatcatgccctcgcgtgttcggtatg
actgccagccccatcgacgccaaaacggacgttgtccaagctgcctccgagttggaaact
ctccttggctgtcggattgccaccacctcggacatgagccttgcagagtccatcaagaag
cccaaagagtgtgtcttgcaatacgatgcacttccacagaccggagcggaaacccttctc
cttcaatcgcttaaagcacgttatggccacgttgaagtcttcaacaagaccttcgagcag
gcgacagacatctcgcgtgttctcggcaggtggtgcgctgacagtcatctcgtcgatgcc
ctgggtagtgataagcttaagaagctggaagccaccgtcgagaggcgattctatgctcga
gaccgtagccaggccgcagattcagaggcacgacaagccgaacttgagcgacagctgaaa
gagctccgagatgcagttgcgtacgttcaagagcaagctacctcaacagccaaccttgct
accgtcacggccgatgatgttagctccaaggtatggtctttgcgcggccatctcgacgcg
caattcgaacgaccttcaaatcatcgatgcatcgtgtttgtcgaccagcgttacaccgct
cggctgctcactcgcttgttccaaaagattggcacaaagcacctgcacagtcaatttctt
atcgggcatgggagtggcaacgccgatgaaggttcattcaccttccgccaacaggtttgg
actctactcaagttcagaaaaggtgtcttcaactgccttttcgctacatccgtcgccgaa
gaaggtctcgatgttccagactgcaatctcgtcgtccgattcgacatgtacaagacgatg
attcagtacgttcaatctcgtggtagggctcgcaacatcaactcaacattcattcacatg
ctggagatgggaaactccatccaaacgaatcttctcaacgaagtccggcaccaggagaaa
gccatgagggatttctgtaacctgctccccgcggaccgcaagctggacggcaaccaagat
ggactcaatgagcttctggaaaaggagaagaacacgcgcacctacacagtacccgccact
ggagccaagctgacttatggcaatgcgttgtcaattctcgcgcacttcgtgtcggctgtc
ccatccgacagcgacgagcctcagcatccgacgtgtgtgatctctgtcactggccagaag
tttctcgcagaggtcctcctacctggaaattctcccattcgctccgtgcttggtcgacct
gaacagaggaagcagcttgcaaaatgttccgccgctttcaacgcttgtctcgagcttcgg
aagaaagagtacctggatgcacacctcatgccgatctaccaaaagaagcttccagccatg
cggaatgctctacttgccacgggcatggacaagacgaagggattcgccatgcaggtcaag
ccgaagatctgggccgagcagcgaggcatagtaccgagccagctatggatcaccctcgtt
gacttcccgcaaggtttggacaggccgcaccgatcttttgccatgttgacgagaagttcg
atcctgcaactgcccaagttcccggtcttcccgagtattggcaagtcaagtgacgtggtc
tccgcgagcctttcacgacctcttgaagtgacaagccaactgcttgcgaagctcaccgct
ttcacgctgaggatcttcctggacgtcttcagcaagacgtacgaagaagacgatgcgaag
ctttcgtactggttggtgcccaccaccatcgcactgcacggagacgaggcaagcaaagat
cgcattcgttcaatcgatccccgcgaagtcatcgattggaacctcgtcgagagtgtgttc
gataacaaggaacacaagtggacacccggaatgcccaatgactttctagccaacaagttc
atcaccgatccttgggatggtagccgcaagttctattccaaggccgtcgatggatcactc
agacaaacggacgaccttccctcagatgtcgtgcctccgcgagccaaatggaccggcaag
acgatcatggactacagcgttagattgtggaagaacgctgataagaagtcacaatggcac
gacaatcagcccgtcatcgaggccgagaaagtgctcttgcgccgcaacatgctggcgtct
ccagaccagcaggaggtcagtgtaagcacaaaggcatacatctgccccgagccattgcgc
atctccgccattccacctgagttggcgacatctctccttttctggccggcagtcatccat
cgaatcgaagcgtacctcattagcattgagggctcagcttcagttggagttgcctgcgat
cctactttcgccctcgctgccttcacgaaagactccgacaatcaaggtgagcatgaggcg
caagagcgagtcaacttccaacgtggcatgggcgagaattacgagcgactagagttcatc
ggcgatacgtttctgaaaaccgccacgacgatctcgaccttcatccagaacccaaacgac
aacgagttcgagttccacgttcgacgcatgcagatgctgtgcaacaagaatctcttcgaa
catgccttggagtacaagctctacgagtatatccgaagtatggcattcaacaggcgaacc
tggtacccagaaggcatgaagttgatggctggtaccggggtcatcaaaggtcaggagaaa
gaaatgtatcactctgagatgacacatgtgctcggcaagaagaccatcgccgacgtatgc
gaggctcttatcggtgctgcatttctcacccacaaccagccggacgagaagtggcagcct
catcactgggagcctgcgattcaagccgtcaccaagcttgttaagagtgacgatcacacg
atgctcaccatggatgactacaaagccgcatacctccttccagactatcagactgcacac
gtcaccgccgttcaacgcgacctggcggagaagatccaacttgagcatgcctacagcttc
aactaccctcgtcttctgtactcagccttctcccacccctccaacccgtacatgcacgct
caagtgcccaattaccaacgcctcgagttcctcggcgacgctctcctcgaccaagccagc
atctcttacctcttctacaaattccctgctgccgacccacaatggttgaccgaacacaag
atggcaatggtctccaacaagttcctcggcgcactgtgcgtcaacattggtttccacaaa
catctccgccactcgcactcctcgctcggcaagcagatccacgcctacgtcgacgaactc
gtcgaagcgcgaacctcctccggtccagactgccgcgactactggaccaccgtctccgac
ccaccgaagtgcctgcccgatgtcatcgaatcttttgtcggcgctatgttcatcgactcc
aacttcaactttgcagaggtccagcgttttttcgaagagcacgtcaagtggtatttcgag
gatatgtccatctacgacacctttgccaacaaccatccatgcacccacctgcaccagcgt
ctacagaccgggttcgggtgtatggactaccgactcatggccaaggagttgccgaacgtg
gagggcggcgctgagaggaaggacgtcgtggcggtggtgatgattcacgatcggattgtg
gcttcaagtggaggaaagagtggacggtatgcgagattgagggtggcgaatcgggcgctg
gaggttttggatggattggcgccattcgagtttcgtgagaaatttggttgcgtgtgcaag
ggcgtagaggatagtggagaggtgattacagtcggtgcggattgtggagtttga
DBGET
integrated database retrieval system
