Zymoseptoria tritici: MYCGRDRAFT_96235
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Entry
MYCGRDRAFT_96235 CDS
T02285
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ztr
Zymoseptoria tritici
Pathway
ztr03018
RNA degradation
ztr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCGRDRAFT_96235
09123 Folding, sorting and degradation
03018 RNA degradation
MYCGRDRAFT_96235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ztr03019
]
MYCGRDRAFT_96235
03041 Spliceosome [BR:
ztr03041
]
MYCGRDRAFT_96235
Messenger RNA biogenesis [BR:
ztr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MYCGRDRAFT_96235
mRNA degradation factors
5'-3' decay
Lsm complex
MYCGRDRAFT_96235
Spliceosome [BR:
ztr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MYCGRDRAFT_96235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
13398592
NCBI-ProteinID:
XP_003848879
JGI:
Mycgr3_96235
UniProt:
F9XL50
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All DBs
Position
10:806382..806930
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AA seq
129 aa
AA seq
DB search
MLPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECY
VRGNNIKYLRVPDEVVDAVKDQQAAQQSQRGGRGGGGMGGRGDHGGRGDRGGRGGARGGR
GGRGRGRGS
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctcggcctcctcaccgcggcgcaaggccacccaatgctcgtcgagctcaag
accggcgagacgctcaacggtcatctcgtcagctgcgatacgtacatgaacatcatgctg
aaagaggttgtgcaaacatcgccggacggagacaagttctttcggttaccagagtgctat
gtgcgcgggaacaacatcaaatacctgagagtgccggacgaagtcgtggatgcagtcaag
gatcaacaggcggcgcaacaaagtcaacgtggtggacgaggaggtggtggtatgggagga
cgaggcgatcatggtggacgtggtgatagaggcggaaggggaggagcgcgcggtgggcgt
ggcggtagagggagggggaggggtagctga
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