Zymoseptoria tritici: MYCGRDRAFT_99415
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Entry
MYCGRDRAFT_99415 CDS
T02285
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ztr
Zymoseptoria tritici
Pathway
ztr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ztr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCGRDRAFT_99415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ztr03019
]
MYCGRDRAFT_99415
Enzymes [BR:
ztr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCGRDRAFT_99415
Messenger RNA biogenesis [BR:
ztr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
MYCGRDRAFT_99415
mRNA degradation factors
3'-5' decay
Ski complex
MYCGRDRAFT_99415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Ski2_beta-barrel
FlhF_N
Motif
Other DBs
NCBI-GeneID:
13395773
NCBI-ProteinID:
XP_003854586
JGI:
Mycgr3_99415
UniProt:
F9X7K0
LinkDB
All DBs
Position
3:complement(639267..643329)
Genome browser
AA seq
1263 aa
AA seq
DB search
MADTLPSALEKLDLYTDQFDGELDDLEKTFLTPSTSFSPEWLDRLQQRWEAPTNYNELFA
IGPTQTRTIIRFTREGLEGRVTGYKEVTVPANSATAKNSTSLLRKPANRADFVRGAAGFY
PFAPGGLDAVEATAAYEDELLQQNQLDGSTKTDKLNRIINFTSEGGLLTVPPGFRRGLRA
SEKPKQEDTAKEVEKILEEESDLPENATEGVPLPKDEDDEDEDTGEDGDEELDALLPVEY
PALAPHGTLAAGRNKFGGRERAHMVDVNRDITNFRELVPEMARDWPFELDTFQKEAVYHL
ENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRTEFDDVGI
LTGDVQIRPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDSERGVVWEEVII
MLPEHVTLIMLSATVPNTYEFASWVGRTKQKDIYVISTPKRPVPLEHYLWADKKMFKIVD
STKHFIEKGWKDANDAMSGKDKILAAEQKAKEKEDTAAAVGRGGRGGRGQAPRGGQQRGG
GNQRGGPQQRGRGQPATRGQGNIARTGRGGGRTTAAQDRNIWVHLVQHLRKEELLPCCIF
VFSKKRCEENADALSNLDFCTATEKSAIHMILEKSLARLKPDDRQLPQIRRLRELLSRGI
AVHHGGLLPIVKECVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKYDNKSFRDL
LPGEYTQMAGRAGRRGLDTVGSVIIVTPGGDEAPPAGRLRQMMLGDPTKLRSQFRLTYNM
ILNLLRVEALKIEEMIKRSFSENATQALLPEHEKQIKLSEADLAKVTRESCNTCDKDIDA
CQEASVNYQRLTADLHLAMLSTPVGRRMFQPKRIIVFRGKNNARTAGVLLREGASKASPP
TVQILEILYRNQRKRQDPDFLPYLPRFRRRFVPLPQNDKEMQLRNTTIPLDSIEALTGTH
VSMDLNAVLQRDPEALTHVKSELLATCQSWTSSSWTELDYYKYLKDMNIRGLMDERRKLA
TTAQEKECIHCPEFPKHFAMAHDQWVIRDKIDSIRQLMSDQNLQLLPDYEQRICVLKDLG
FIDDQTRVELKGKVACEIHSADELVLTELVLENVLADYEPEEIVALLSSFVFQEKTDITP
NITPALEKGMETIVKISEKVNHYQTLHQVILSADDSNDFVSRPRFGLVEVVYEWARGMPF
SKITDLTDVLEGTIVRVITRLDETCREVKNAARIIGDPTLFTKMQTCQELIKRDICATAS
LYM
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggcggacactttgccatcagcgcttgagaagcttgatctgtacaccgaccagtttgat
ggggagctcgatgacctggaaaagacatttctgacaccttcaacgtcattcagtccagaa
tggctagacaggctgcagcagagatgggaagcgccaacaaactacaatgagctctttgcg
atcggaccaacccagactcgaaccatcatccgatttacgcgagagggtctggaaggacga
gtgacgggctacaaagaagtgactgtaccagcaaacagtgctaccgcgaagaattcgacc
tcacttctcagaaagcctgcgaacagagccgatttcgttcgtggagccgcgggtttctat
ccttttgcgcctggcggccttgacgcggttgaggcgacagcagcatacgaggatgagctt
ctccagcagaaccagcttgatggctcgaccaagaccgacaagctcaaccggatcatcaat
ttcacttcagaaggcgggctgctgacggttccgcccggattccgccgtggacttcgtgcc
agtgaaaagccgaagcaagaggacacggccaaggaggttgagaaaatcctggaagaagaa
tcagacttgcctgaaaatgccacggaaggcgtgcctttgcccaaggacgaggacgatgag
gacgaggacaccggcgaagatggcgacgaggaactcgatgctctcttgcctgtagagtat
ccagcactggccccgcatggaactcttgccgcaggacgtaacaagttcggcggtcgagaa
cgagctcacatggtggatgtcaatcgcgatatcaccaattttcgagaacttgtgcctgag
atggctagagactggccgttcgagttggatacttttcaaaaagaggctgtctatcatctc
gagaatggcgattcagtctttgttgcagctcacacctctgccggcaagaccgttgttgct
gagtacgccatcgcattggctgcaaagcacatgacgaaagccatctacacatctccgatc
aaggcactgagtaatcagaagttccgcgatttcaggaccgagtttgatgatgttggtatc
ttgacaggagatgtccagatccgtccggaggccagctgtctcatcatgaccaccgagatt
ctgcgcagcatgctgtaccgtggagccgatctcattcgcgatgtcgagttcgtcatattt
gacgaggtgcactatgtcaatgattctgaacgcggtgtggtctgggaggaagtcataatt
atgctgccggagcacgtgacgttgatcatgctgtctgctactgtaccgaatacgtacgag
ttcgcctcatgggtaggccgaacgaagcagaaagatatctacgtcatctcaacgccgaag
cgtcctgtaccactcgagcattatctgtgggccgacaagaagatgtttaagattgtggac
tcgaccaagcactttatcgagaaaggctggaaggacgccaacgatgccatgagcggaaag
gacaagatccttgcggcggaacaaaaggccaaagagaaagaagatacggcagcagcagta
ggtcgtggaggtagaggtggccgtggtcaagcccctcgtggtggtcagcaacgtggcggt
ggcaaccaacgaggcgggcctcagcagcgaggacgtggtcagccagcaacccgcggtcag
gggaacattgcacgcactggtcgcggaggtggccggactactgctgcgcaagaccgcaac
atctgggtccacctcgtgcagcatttacggaaagaagagcttctgccgtgctgcatattc
gtcttctcgaagaagaggtgcgaggaaaatgccgatgccctgtcgaatttggacttctgc
actgccacggagaagagcgctattcatatgattctggagaagtcattggctcgactcaaa
cccgacgaccgacaattgccgcaaattcgacgtcttcgagaattgctcagcagaggtatt
gcagtgcaccatggaggtctgctcccgatcgtcaaggagtgcgtggagatcctcttcgcc
aagacactggtcaaggtcttgttcgccacggagacatttgccatgggtctcaacttgccg
acaaggacagtcgtattctctggcttccgcaagtacgacaacaagtctttccgagacctt
cttccaggcgagtacactcagatggctggtcgagctggtcgaagaggtctggacactgtt
ggttccgtcatcatcgtgacgcctggcggcgatgaggcgccgccggcaggccgtctgcgg
cagatgatgctcggcgaccccaccaagctccgctcacaattcagactcacgtataacatg
atactaaatctgttgcgagtggaagctctcaagatagaagagatgatcaagcgatctttc
tctgagaacgccacccaagcattgctacccgagcacgagaagcagatcaagctttctgag
gcagatctagcaaaggtcacgcgtgagtcttgcaatacgtgcgacaaggacatcgatgcg
tgtcaggaagccagtgtcaattatcaacgactgacggctgaccttcatctcgcgatgctc
tctactccggtgggacgaaggatgtttcagcccaagcggatcatcgttttcagagggaag
aacaatgcacgaacagcaggtgtacttctccgagagggcgccagcaaagcctcgccgccg
accgttcagatcttagaaattctctaccggaaccagaggaagcgacaggatcctgacttc
cttccctacttgcctcgattccgcaggcgctttgtgccattgcctcagaacgacaaggag
atgcagttgaggaacactacgatccctctagacagtattgaggctctgaccggcacacac
gtatcgatggatctcaatgctgtgcttcagagagatccagaggcgttgacccatgtcaag
tccgagctgctcgcaacatgtcagtcatggacatcatcttcgtggacagagctcgattac
tacaagtacctgaaggacatgaacattcgtggtctgatggatgagcggagaaagcttgcc
acaacggcgcaagaaaaggaatgcatccattgtcccgagtttccgaagcattttgccatg
gcgcacgatcagtgggttattcgcgacaagatcgattctatccgacaactcatgtcagac
cagaatctgcagcttctacccgattacgagcagcgaatctgtgtgttgaaggatctcgga
ttcatcgacgaccaaacacgagttgagctcaaaggcaaagtggcctgcgagattcactcc
gcggacgaacttgtactgactgaactggtcttggagaacgtcctcgccgattatgagcct
gaggagatcgtcgccctcctgtcatcctttgtctttcaggagaagaccgacatcacgccc
aacatcacccctgcgcttgaaaagggcatggagacaatcgtcaagatctcagagaaagtg
aatcattaccagacactacaccaagtcatcctctcagcagacgactcgaacgatttcgtc
agtcgcccccgtttcggcctggtggaagtggtgtacgagtgggcgcgcgggatgcctttc
agcaagatcacagacttgacagatgtgttggagggcacgatcgtcagggtcatcacgaga
ttggatgagacctgcagagaggtgaagaatgcggcgcggatcattggtgatcctacgcta
ttcaccaagatgcagacttgccaggagctaatcaagagagacatctgtgctactgcgtct
ctatacatgtag
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integrated database retrieval system
