Zootoca vivipara (common lizard): 118076838
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Entry
118076838 CDS
T07275
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zvi03041
]
118076838 (YTHDC2)
Enzymes [BR:
zvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118076838 (YTHDC2)
Spliceosome [BR:
zvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118076838 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
AAA_22
Ank
nSTAND3
ATPase
Ank_4
PhoH
AAA_23
AAA_16
AAA_7
T2SSE
SRP54
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
118076838
NCBI-ProteinID:
XP_034955851
LinkDB
All DBs
Position
LG18:complement(18562998..18597069)
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AA seq
1457 aa
AA seq
DB search
MSRPSSVSPRPPGGGGGGGPPSGGPSTAAASSSSSCSGRTKGLKDIRIDEEVKIAVNIAL
ERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGASRYLTVKKKDGSELAHT
VMTCNLIPNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNG
IPQIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVILIVGETGSGKTTQIPQFLLDD
CYKNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTN
GVLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSSLKLILSSAALDV
NLFLRYFVGCPVIYIPGRPFEVKEMFLEDLLRSTGYTNKEMIKYKKEKQREEKQQTTLTE
WYSAQDNSKPELQRQRAIPNVAEEYDLLDDGGDTVFSQLAEKDVNCLEPWLIKEMDACLS
DIWLHKDIDAFAQVFHLILTENVSVDYRHSETSATTLMVASGRGFLSQVEQLIGMGANIH
IKSSNGWTALDWAKHFGQTEVVDLLESYCASLESGNLDESSLVHANASELSAEDRELLKA
YHHSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNAH
RFQVFMLHSNMQTSDQKKVLKTSPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSF
DALNCVTMLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQ
ELCLHTKLLAPINCPIADFLMKAPEPPPALIIRNAVQMLKTIDAMDTWEDLTELGYHLAD
LPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTF
SDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARG
GGDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENIVLTGPKEKKVRFHPTSVLSQPQY
KKIPPANGQVAAIQALPTDWLIYDEMTRAHRIANIRCCSTVTPVTVALFCGSARLPSNAL
QEPSSFRVDGVPNDSSDSEMEDRTTANLAALKLDEWLHFKLDPEAASLLLQLRQKWHSLF
LRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPVASSWR
SNTSRKSSAEAEFADDAFNAERNPPKATLSYDINKEQNNTILRVLMKSASPAFHQPLKYK
ERSVLHSKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIM
KSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVYLVFSVQGSGHFQGFARMSSEIG
REKSQDWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQ
LLQLWDRIPLGERNAAD
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcccgagcagcgtctcccctcggcctcccggaggcggaggcggcggcggtcct
cccagcgggggcccgtccaccgccgccgcctcgtcctcgtcgtcctgctccggccggacc
aaagggctgaaggacattcgcatcgacgaggaggtgaaaatcgccgtgaacatcgctctg
gagaggttccgatatggggaccagcgagaaatggaatttccttcctccttgactagtact
gaaagagccttcattcatcgactgagtcaatcgcttggtttgatttctaaaagtaaaggg
aaaggtgcaagcagatatttaactgtgaagaaaaaagatggctcagagttggcacataca
gtaatgacatgtaatttgattcccaacacaaaacatgctattagaagccttgtacagcga
tttccagtcaccaataaagagcgcaccgagcttctaccaaagacagagagaggaaatgtt
tttgctgttgaagctgagaatagagaaatgagcaaaacaagtgggcgacttaacaatggc
attcctcaaatcccagtgaaacggggagaatctgaatttgattcgtttcggcagtctcta
ccagtttatgagaagcaggatgaaattgttagaattattaaagaaaataaagttattttg
attgtgggggaaactggatcaggaaaaactactcagattccccagtttctacttgatgac
tgctacaaaaatggaataccatgtcgcatattttgcactcagccaagacgtttggcagca
attgctgtggctgaaagggttgctgctgaaagaagagagaagattgggcagacgattggc
tatcaaatccgattggaaagcagggtctctccaaagacgcttttaacattttgcactaat
ggtgtattacttcgtacattaatggcaggagatagtgcactgtcaactgtaactcatgtt
attgtggatgaagtccatgagagagatcggttcagcgacttcttgttaacaaagttaaga
gatacactacaaaaacactcatcgttgaaactcatactttctagtgctgccctggatgtg
aacctctttctcagatattttgttggctgtccagtgatatatataccaggaagaccattt
gaagtaaaagagatgttccttgaagacctactaagaagcacaggctatacgaataaagag
atgatcaaatacaaaaaggaaaaacagcgagaggaaaaacaacagacaactctgactgag
tggtattctgcacaagacaacagcaagccagaattgcagcgccagagagcaataccgaat
gtggctgaagaatatgatctgttggatgatggcggtgacacagtgttcagtcagttggct
gaaaaagatgtcaactgccttgaaccttggttaattaaagaaatggatgcttgtctctct
gatatttggctacacaaagacattgatgcctttgcacaggtgttccaccttattttaact
gaaaatgtcagtgttgactacaggcacagcgagacaagtgcaacgactttaatggtagct
tctggaaggggtttcttgagtcaagtagaacagctgattggtatgggagcaaacattcac
atcaaatcatccaatggctggacagctttagactgggctaagcacttcggacagacagaa
gtggttgatctgttggagtcttattgtgcctcactagagtcgggtaatcttgatgaaagt
tctttggtccatgcaaatgctagtgaactcagtgcagaagacagagaactcctaaaggct
tatcatcacagctttgatgatgaaaaagtagatctcgacctgatcatgcacctgctatac
aacatctgtcacagctgtgatgcaggagcggttttaattttccttcctggatatgatgag
attgttggcttgagagaccgcatcctttttgatgacaagaggtttgctgataatgctcac
aggttccaagtttttatgctgcattcaaatatgcagacatcagatcagaagaaggttcta
aagacctctcccccaggcatccgcaaaataattctttctacaaatattgccgaaaccagc
atcacagttaatgatgttgtctttgtgattgactctggaaaaatgaaggagaagtctttt
gatgcattgaactgtgtgaccatgctgaagatggtatggatttctaaagctagtgccgtt
cagagaaagggcagggcaggacgttgtcgacctggaatttgtttccgactttttagtaga
ctcagatttcaaaatatgctggaatttcagaccccagaactactaagaatgcctctacag
gagctttgtttgcatacaaaattgctagctcccatcaactgtccaattgctgacttcttg
atgaaagctccagaaccacctccggctttaatcataagaaatgctgtacagatgcttaag
acaatagatgctatggatacctgggaggatctgacagaacttggctatcatctggctgac
ttaccagtagaacctcatcttggcaaaatggtgctgtgcgccgttgttttgaagtgcctg
gatcctattctgacaatagcatgtacccttgcatatcgcgacccattcgtgttacctaca
caggcctctcaaaagcgtgcagccatgctgtgtagaaagagatttactgcaggaacattt
agtgaccatatggctcttctccgggcttttcaggcatggcaaaaggcgcgaagcgatggc
tgggaacgagctttttgtgagaagaatttcctttctcaggcaacaatggagattatcata
ggaatgagaacacagctgcttgggcaactcagagcatcaggttttgtaagagccagaggt
ggtggcgacataagagatgttaacaccaactctgagaactgggctgtggtgaaaggtgcc
ttagtagctggaatgtaccccaacatagttcacgttgacagagagaacattgttttgact
gggccaaaagaaaaaaaagttagatttcatcctacctcagttcttagccagccccagtat
aaaaagattcccccagcaaatggtcaagtggcagctattcaggcacttcccacggactgg
ctcatatacgatgaaatgacaagagcccaccgcatagccaatatcaggtgctgctcaact
gtgacgccagtcactgtggccctcttctgtggatcagctaggttgccaagtaatgctttg
caggagccttcctccttcagagtggatggtgttcctaatgacagcagtgatagtgagatg
gaagacagaactactgctaacttggctgccttgaaactggatgaatggcttcatttcaaa
ttagacccagaggctgctagcctactcctgcaattgaggcagaaatggcatagtttattt
ttacggcgcatgagagctccttcaaagccctggtctcaagttgatgaggcaaccatacga
gcaatcattgctgttttaagcacggaagaacagtctgcaggtctacaacagccttcggga
attgggcaaagaccaagacccatgtcatctgaagaacttcctgtagcgtcttcatggaga
tcaaacactagccgaaaaagctcagcagaagcagaattcgcagatgatgcttttaatgct
gaaagaaatccccccaaagcaactttaagctatgatataaacaaagaacagaacaataca
atattaagagttctaatgaagtctgcatctccagcatttcaccaacccctgaaatacaaa
gagagaagtgttttgcattccaaacgaagtacagatgataggtcagaccagtcgtctgtg
aaatctacagacagcagcagttaccccagcccctgtgccagtccttctccgccatcatct
gggaagggctccaagtctccttctccaagaccaaatatgccagttcgatacttcattatg
aaaagcagcaacctgagaaaccttgagatttcacagcagaaggggatttggtctacaacc
ccaagtaatgagcgaaaactgaaccgagccttttgggagagcagtgttgtttacttagta
ttttctgttcagggttcgggacactttcagggctttgctcgaatgtcttcagagattgga
cgtgagaagagtcaggattggggttctactggcttaggaggagtattcaaggtggagtgg
atccggaaagaaagtcttccttttcagtttgctcatcatttgctcaacccttggaacgac
aacaagaaagtacaaataagtcgggatggccaggaactggaacctcaggttggtgaacag
ttgctacagctctgggaccgtattcctttaggagagagaaacgctgctgattga
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integrated database retrieval system
