Zootoca vivipara (common lizard): 118078374
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Entry
118078374 CDS
T07275
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zvi03021
]
118078374 (SETX)
Enzymes [BR:
zvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118078374 (SETX)
5.6.2.5 RNA 5'-3' helicase
118078374 (SETX)
Transcription machinery [BR:
zvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118078374 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
Viral_helicase1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
118078374
NCBI-ProteinID:
XP_034958105
LinkDB
All DBs
Position
Unknown
AA seq
2291 aa
AA seq
DB search
MRMETCCWCTPINSVATTLKRYASSSLPPDKFAAANEDLCYCLECVDEYHKAKDEMPSLH
EILWKLETTRLIAHFEKSMPKEDVIYILDNDEERQVQCRDSDFEKKVRVPLLEILKYPYL
LVHKDLSILFVRTLCRMEVINYPCQVFGKHPGIYLLMVHPNESIRRWAILTARSLGKVDR
DDYYDIQEVLTCLLKVIELDLFENACVYSPRTIEKGNLILLPDHLYDSTSYKNYWLGICM
MLMVLDEQAMDSMLLNPEKQTDFMQCIISTLKKDTDDESNSPFWPALHCFMVILDKLGSK
VWGQHIDPTEAFQTINNSVSYNKEIERIRQRCKRTRSVPLSETEDEMVTCSQLVYGYHLE
KPQKVTGQKYDVCANYFPDLYEDMRKLIDAFQNDFGQDIRLHNSTFLWLVPFIHSLMGLR
ELGIGYSVEVMNHLCLKADVSENSAKSYDKVSQFYIWILVIVIQLHLKKQCLGSLWVSAE
KWVRIVVAWAKVPRAVFMVGIERMVARSCLRSTATSPSVETESVQSFCMKLIRNILKEGL
CGEKAPVCKHFFVELNMLLRNRMNWELSSRQTEELQGTLKHIIRSMRVQLVTPPPTLESP
PTCVTEKQEGMCPVNMCKDTGAEKDEVCQEGQVQDDTDVQKNMSCHQTLGAHNKGDLDWG
IEHIRVENIRSLAETPIVSRPLMTKNNDNSDALEKSVGQNDLTSQRKPLRPDVTLKLRQL
IENSRRSTALEPETEEEQSVRDQRKSQEGRKSDIVAGSASNTSKPFLYRDLQVEFRTDQH
NPEESSSDDSRDKTSFDIMKDLENRPAEAVADATTTATDSQIDVLSKDTFIAYTKDTSSP
VDSRQESSKKVIDSDQSQSSSEDELSIQRIIISDSSDEDENQVSSSRESRKDKTCVSEKQ
PSAQGQEPMNTSPTNAEHESQLFEFEAEYDMYSEWQDSQMDEELTEEENLLVETDNGHTN
IDLEINNWGYESNPHWLNATEEAKEDQVQNSKTKTKPHTPAQKVNISSRNAMCYSTSTGT
DAGCSRHIDPSAPIDPSESASTVKESTIQPGNAPPQAESARSTPAVVPPAKVHHFPPPAS
LTEELGLSKKVRRAAELSQRTQDSLAELRRYGEIAGRVVQKRASQLINATHLPIKKRKIL
SCQELQFYRQTRPNEREKGKNPSSSILEARVSKTSPLTSTDSSSSSSDEDVALKVGEPQL
NENIEDDNLFLTQPDPVDMELCSQRESGSNPTHMEVSVSASPLQDAKEICKEAAEAGAHS
TSCSAGGPQDNASTKTFAPPRLSTVKIFSVSSRSANLTKELESTPKPPAVPKSKSNPFKP
PTSKENGLQYKIPLLNSFLQPQNLNNVPQLLNVQNKSNVYNGGVLPASRAVSRREMNPRV
TQANSVNAQQRNPAIFIREILKWNYDMFAQFSQFGPPSHLLQSIITTVPATFNDYNDYFN
TFFPLMMLNTFETVAQDWIENQKSKDKRPCHLILLNFNLDTNEADFTANLSESKLRKNQY
PKQDDFVVLTVYEKQAFHSNPGEGESRPVHHVGCVTRFYYKSKEQDAISLSIKTQGNLSC
IEKRVKCLTIGSMVTIQRMFKALLLLNRSPLAQAIIRPEYTNFSLTGSNANSDNCSLYMR
EFNEDQRTAIKTAYALVTQYPSLPKVCLIHGPPGSGKSKTILGLLYCIFIERPGKRNSVQ
SKIKNRVLLCAPSNAAVDDLMKKIILMFKENCQDSSKPLGNCGDINLVRLGQESSINNDV
WRFSLDAQADHEMNRAALGTKQDIYRRKEELDQQLDILSRQRAIEKNKSVDKMRMLDQEI
CTLAEERRRLTVQLKKDCGRSQGDLKANIILKSHIICCTLSTSGSSMLVSAFQRQGCDPL
SCVIVDEAAQSCEIESLIPLTHGCKKLVLVGDPKQLPPTVKSMKAEDYGYGQSLMERLCR
QLNGQLQEKVINRLPVLCLTIQYRMHPEICLFPSNYVYDHALKTDGWTEENRFSNNWPFL
PYLLFDVLDAQERRESDSFINLEEVKLVVELMKLITKMKKGINSHNIGIITPYNAQKRRI
LSELEKEFGREEKSVAEVDTVDGFQGREKDCIIVTCVRAKSTQGSIGFLKSLQRLNVTLT
RAKYSLFILGHLETLMENKDWNALIQDAQKRGSIIRTSNTNYNNIPCYASGAKMILKPMP
VQQSPGRAKIGHVTMVATSGEASTQHPQISSGAPVPGSLLGVRFGQLALAAQLGKPPVQH
PQALSSGAPAPGNSGAPLMPASGDSSSSNPQATSQNRPRDPRLAKRAQEGIKRSATESHS
RTDPKRQKTTE
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atgagaatggagacgtgctgttggtgcacccctattaattcagttgccaccaccttaaag
cgctatgcctcctcttcattgcccccagataaatttgctgcagccaacgaagacctttgt
tactgtttggagtgtgtggatgagtatcataaagcgaaggatgagatgccatccttacat
gagatcctttggaagcttgaaaccactcgtcttattgcccattttgagaaatcaatgccg
aaggaagatgtcatctatatcctggacaatgatgaggaaagacaggtgcaatgccgggat
tccgacttcgagaaaaaagttagagtgccattgttggaaatactgaaatacccctaccta
ttggttcataaagacctcagcatactgtttgtgaggaccctatgcagaatggaggtaatc
aactacccctgccaggtgtttgggaaacacccagggatctatttgctcatggtacaccct
aatgaatcgatccgtcgatgggccattctgacagccaggagtctgggaaaggtggacagg
gacgattactatgacatccaagaagtgctaacttgcttgctcaaagttatagagctggac
ctctttgaaaatgcttgtgtttatagccccagaacaattgagaagggtaatctcatcttg
ttgcctgaccacctgtacgatagtaccagttacaaaaactactggctaggtatctgtatg
atgctgatggtgctggatgagcaagccatggattcgatgttgcttaaccctgaaaagcag
acagacttcatgcaatgcataataagtacccttaagaaagacacggatgatgaaagtaac
agtcccttctggcctgcactccactgcttcatggtgatcctggataagcttgggtccaaa
gtgtgggggcagcacattgatccaactgaggcattccaaactattaacaacagtgtgagt
tataataaagaaatagagagaattcgccaaaggtgcaagaggactagatctgtgccacta
tcagaaactgaagatgaaatggtcacctgcagccaactggtgtacggctaccacctagaa
aagccacagaaggttaccgggcagaaatatgatgtttgtgctaattacttccctgacttg
tatgaagatatgagaaaattaatcgatgcattccagaatgactttggccaagacatacgg
ttgcacaacagcacttttctatggctcgtccctttcatccactcccttatgggcctcagg
gagctggggattggctacagtgtagaggttatgaaccacctgtgtttaaaagcagatgtc
tccgagaactctgctaaatcttatgacaaagtatctcagttctatatttggatcctggtg
atcgtgattcaactccatcttaagaaacagtgcctgggttctctgtgggtcagcgcggaa
aaatgggtgcggatagtggtagcatgggccaaggttccacgtgcagtgttcatggttggc
attgaaagaatggtggccaggagctgcttaagaagtacagctacatcaccatctgtggaa
actgagtctgtgcagtctttctgcatgaaactgattcgtaatatcctgaaggaaggctta
tgtggtgagaaggctcctgtttgtaagcatttctttgttgaactcaacatgcttctccgt
aaccggatgaactgggagctgagttcccgacagactgaagaattgcagggcactctaaag
catatcatacggagcatgcgggtccaattagtaactcccccccccaccttggagagccct
cccacttgtgtaactgaaaagcaggaaggcatgtgtccagtgaatatgtgcaaggacaca
ggggcagagaaggatgaagtctgccaagaaggccaagtacaggatgacacggatgttcaa
aaaaacatgagctgtcaccagacactaggggcccataacaagggagacttggactggggt
attgagcacataagagttgagaacatcaggtcattggcggagacacctatagtttccaga
cctctgatgacaaagaacaatgacaacagtgatgctttggagaaaagtgttggtcagaat
gaccttacaagccaaaggaaacctctgagacctgacgtcaccctgaagttgagacagctg
attgaaaacagtagaagaagcaccgcgctggagccagaaacagaggaggagcagtcagtt
agagaccaaaggaaaagccaggaagggcggaagagtgatattgttgcaggtagcgctagc
aacacatcaaagccatttctctacagggacctgcaagtagagtttagaacagatcagcac
aatcctgaagaaagcagcagtgatgactcaagggataagacgtcatttgacattatgaag
gatctggagaatagacctgcagaagctgtcgctgacgcaaccaccacagcaacagattcc
caaattgacgtcctcagtaaagacacattcattgcttacaccaaagacactagttcccct
gttgactctaggcaggaaagcagcaagaaagttatagactctgatcaatctcagtcttcc
agtgaggacgagttgtcaatccagaggattattatttctgattcttcagatgaggatgaa
aaccaagtgagctctagtagagagagcaggaaagataaaacatgtgtgtctgagaagcaa
cccagtgcacaggggcaagagccaatgaatacctcaccaacaaatgcagaacatgaatcg
cagttgtttgagttcgaagcagaatatgacatgtactcagaatggcaggacagtcaaatg
gatgaggaactgacagaggaggagaaccttttagtggagacagacaatggccacacaaac
attgacttggaaataaataactggggttatgagtcgaatcctcattggcttaatgccact
gaagaagcaaaagaggaccaggtgcaaaatagtaaaactaaaacaaagccacatacaccg
gctcagaaggtcaacattagcagcagaaatgcaatgtgttactcgacttccacagggacg
gatgcagggtgttccagacatatagatccatcagcacctattgatccttcagagtcagca
tctactgtcaaagagtctactattcagccagggaatgcaccaccacaggcagaatcagca
agatccactcctgctgtggtcccacccgccaaagtccaccattttccacccccagcctca
ctgacagaggaacttggcctgtcaaagaaagtccgtagagcagctgaactatctcagcgc
acgcaggacagtctcgctgagttgcgtcgttatggggaaattgctggcagggttgtacag
aaaagggcatcacagctaataaatgctacacacctacctattaaaaagagaaaaattctt
tcttgccaagaacttcagttctataggcagacaaggcctaatgagagagagaagggtaag
aacccaagttcctcaatccttgaagctagagttagtaaaaccagccccttgacctctacc
gattcctcctctagctcttctgatgaggatgtggctttgaaagtgggagagccacaattg
aatgagaacattgaagatgacaacttgtttcttacacagccggatccagtggacatggag
ctgtgttcacaaagagaaagtggcagtaaccccacacacatggaagtcagtgtatctgca
agcccactacaggatgctaaggagatatgcaaggaagcagctgaagcaggggctcacagc
acaagctgttctgctggtggcccacaagacaatgcatccaccaagacttttgcaccccct
aggctctccacggtgaaaatcttcagtgtttcttcccggagtgcgaacctcactaaggag
ctcgagagcaccccaaaacccccagcagttccgaagagcaaatcaaatcccttcaagccc
cccacctcaaaggagaatggattgcagtacaaaatccctttgctgaacagctttctccaa
ccgcagaatttgaacaacgtccctcagttgctaaatgtgcaaaataaatctaatgtgtat
aatggtggggtgctgcctgcctccagagctgtttccaggcgtgaaatgaatccacgcgtc
acacaagcaaacagtgtgaatgcccagcagagaaatcctgctatatttatcagagaaatc
ctgaagtggaactatgacatgtttgcacagttcagtcagtttgggccaccaagtcacctc
ctacaatctatcatcacaactgttccagccacgtttaacgattacaatgactacttcaat
actttcttccccttaatgatgctaaatacctttgaaacagtggcacaagattggatagag
aaccagaaatcgaaagacaaaaggccttgccacttaattttgctgaacttcaatctggac
acaaatgaagcagattttacagctaacctctcggagagcaagttgaggaaaaatcagtac
ccaaagcaagatgactttgtggtcttaacagtgtatgaaaagcaagcctttcatagcaac
cctggcgagggagaaagccgcccagtgcaccatgtcggttgcgtgactcggttttattat
aaaagcaaagagcaggatgccattagcctgtctatcaagacacaagggaatttgtcctgt
atcgaaaagagagtaaagtgcctcaccattggttcgatggtcaccatacagcgaatgttt
aaggcccttcttctgcttaaccgaagccctctagcccaagccataatacgcccagaatac
accaacttctctctcacgggatcaaatgcgaactctgataattgttctttgtacatgaga
gaatttaatgaagatcaaaggacagctattaaaacagcttatgccctcgtgacacagtat
ccttcactgcccaaagtttgcttgatccatgggccacctgggtctgggaaatctaagact
atccttggactcctttactgcattttcattgagagaccaggaaaaagaaattctgtgcaa
agcaaaatcaagaaccgtgtgctgctgtgtgccccatccaacgctgccgtcgacgacttg
atgaaaaaaattattcttatgttcaaggaaaattgccaggacagtagcaaacctttggga
aactgtggcgacatcaacttggtgagactgggacaagaaagctcgatcaacaatgatgtc
tggaggtttagtctagatgcccaggctgaccatgagatgaaccgagcagcccttggcaca
aagcaagatatttacagacgaaaagaagagctggatcaacagctggacattctttctcgc
cagcgtgctatagaaaaaaacaaaagcgtagacaagatgcgaatgttagaccaggagatt
tgcacacttgctgaggaaagaaggaggctcactgttcaactgaagaaggattgcggacga
tcacaaggcgatttgaaagcgaacatcatcctgaagtctcacatcatctgctgcacgctg
agcaccagtgggagtagcatgctggtatcagcattccagcggcagggctgtgaccctctg
agctgtgtcattgtggatgaggctgcacagtcttgtgagattgaaagtctcattccgctc
actcatggctgcaaaaaactggtcctggttggagacccaaaacagctgccccccacagtt
aaatccatgaaagctgaggattacggctatgggcagtctctgatggagcggctgtgcaga
cagttaaatgggcagctccaggagaaagtcattaacaggcttccagtcctgtgcttgacc
attcaatacaggatgcaccccgagatctgcctcttcccttctaactacgtctatgaccat
gctctgaaaactgacgggtggacagaagagaaccgattctctaacaattggcccttccta
ccgtacctcctcttcgatgttttggatgcccaggagagaagggagagcgattccttcatc
aatctcgaggaagtgaaactggtcgtagaattaatgaagttaattacaaaaatgaagaaa
ggcatcaactctcataacattgggatcatcaccccatacaatgctcagaaaagaaggatc
ctgagcgagctggagaaagagtttggaagagaagaaaagagcgttgcagaagtcgacact
gtggatgggttccagggccgtgagaaggactgcatcattgtcacctgtgtcagagcgaaa
agcacgcaagggtcaatagggttcctgaagagtctgcagcgtctgaatgtcaccctcacc
cgagccaagtacagcctcttcatccttggacacctggagacgctcatggaaaataaagat
tggaacgcattgattcaggatgctcagaaaagaggctccatcatcaggacctccaacacc
aattacaacaatattccttgctatgcaagtggtgctaagatgatcctgaagcccatgcca
gtccagcagagtccggggagagccaagattgggcatgtgaccatggtggccacgtcgggt
gaagcttctacacaacatccccagatatcttctggtgctcctgttccagggagtctgctg
ggagtcagatttgggcagctggccctggcggcccaattgggtaaacctcctgtacaacat
ccccaggcattatcttctggtgctcctgctccagggaacagtggggcacctctgatgcca
gcatctggggattccagttcctcaaacccacaggctacatctcagaataggccaagagat
ccacggctggccaagagggcacaggaaggaatcaaaaggagcgccactgagagccatagt
cgcacagatcccaagcggcagaagacaacggagtag
DBGET
integrated database retrieval system
