Zootoca vivipara (common lizard): 118079192
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Entry
118079192 CDS
T07275
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi04510
Focal adhesion
zvi04512
ECM-receptor interaction
zvi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118079192 (COL2A1)
04518 Integrin signaling
118079192 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118079192 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118079192 (COL2A1)
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118079192 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
118079192
NCBI-ProteinID:
XP_034959109
LinkDB
All DBs
Position
LG2:10363532..10450450
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFVDSRTLVLLAATQVILLAVVKCQDEDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDNIICEELRDCPNPEIGFGECCPTCPTDQPAASGRQPGPKGQKGEPGDIKDVV
GPRGPPGPQGPSGEQGPRGERGDKGEKGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGSPGPQGFQGSPGEPGEPGTG
GPMGPRGPPGPPGKPGDDGESGKPGKSGERGAPGPQGARGFPGTPGLPGVKGHRGYPGLD
GSKGEAGAAGAKGEAGSAGEAGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGSPGFPGAPGAKGEAGPTGARGPEGAQGSRGESGTPGSPGPSGAPGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGEPGPS
GPQGAPGPAGEEGKRGGRGEPGAAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPP
GLGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPAGPVGERGEQ
GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSPGSQGLQ
GPRGLPGTPGTDGPKGATGPAGAVGAQGPPGLQGMPGERGAAGISGPKGDRGDIGEKGPE
GAPGKDGGRGLTGPIGPPGPAGANGEKGESGPPGPAGAAGARGGPGDRGEPGAPGPAGFA
GPPGADGQPGAKGEQGETGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGSAGPPGSPGKDGPKGARGDAGPTGRAGDPGLQGPAGPPGEK
GESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGPGDR
GPPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGAVGGPGAPGPPGSP
GPVGPTGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGET
GQAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPMRYMRSDQASSNLRQHDAEVD
ATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCN
METGESCVYPKPSSIPKKNWWTSKSKDKKHIWFGETINGGFHFSYGDENLAPNTANIQMT
FLRLLSTEGSQNITYHCKNSIAYMDEASGNLKKALLIQGSNDVEIRAEGNSRFTYSALQD
GCTKHTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactctagtgctcctagcagccacgcaagtcatttta
ttagcagttgtcaaatgtcaggatgaggatatacaggaggcaggcagctgtgtacaggat
gggcagaggtatagtgataaagatgtgtggaaacctgagccctgccggatctgtgtctgt
gatactgggactatcctctgcgacaacataatctgcgaagaactgagagactgtcccaac
cctgagataggcttcggagagtgttgtcccacctgtccaactgaccagcccgccgccagt
ggtcgacaacctggccccaagggacaaaaaggagaacctggcgatattaaagatgttgta
ggaccaagaggaccccctggaccacagggaccttcgggtgaacaaggaccaaggggagaa
cgtggagataaaggagagaagggtgctcctggcccacgcggcagagatggcgaacctggt
acacctggcaaccctgggcctgctggacccccaggccccccaggtccccctggccttggt
ggaaactttgctgctcagatggctggaggatttgacgagaaagcaggcggcgctcagatg
ggagtgatgcaaggaccaatgggacctatgggaccacgaggacctccgggacctccagga
tctcctggccctcaaggatttcaaggcagccctggtgaacctggcgaacctggtactggc
ggtccaatgggtccccgtgggccacctgggccacccggaaaacctggcgatgatggtgaa
tctggcaaacctggcaaatcaggagagcgtggggcacctgggcctcagggtgctcgaggt
ttccccgggaccccaggtcttcccggcgtaaaaggtcacaggggttatcctggattagat
ggttccaagggagaagctggtgctgcaggcgctaagggtgaagcgggctctgctggagaa
gctgggtcacctggtccgatgggtccccgtggtcttccaggcgagagaggacgtcctggc
ccatctggtgctgcgggtgctcgtggtaacgatggtctccctggtccagctggtccaccc
ggacctgtcggccctgctggatctccaggtttcccaggtgcaccaggtgcaaagggtgaa
gctggccccactggcgctcgtggccctgagggcgcccaaggctctcgaggtgaatctggg
acccccggctcccctggaccatcaggagctcctggcaaccctggaactgatgggatccct
ggtgccaaaggatcagcgggtgctcctggcattgctggtgctccgggatttcctggccca
cgtggaccacctgggccccaaggtgcaactgggcctttgggtcccaaaggccaggcggga
gaacctgggattgcaggcttcaaaggtgaacaaggtcctaagggtgaacctggaccttca
ggcccacaaggagctcccggaccagctggagaagaaggcaagagaggcggtcgtggtgag
ccaggagctgcagggcccattggaccacctggagagaggggttctcccggaaaccgtggc
ttcccaggtcaagatggattggctggtcccaagggtgctcccggggaacgtggacctcct
ggccttgggggtcccaaaggagccactggagatcccggccgtcctggagagcctggcttg
cctggcgctaggggtctcactggtcgccctggtgatgctggtgctcaaggcaaagttggc
ccatctggtgccccaggtgaagatgggcgacctggcccacctggtccacaaggtgcccgt
ggccagcctggcgtcatgggtttcccaggcccgaaaggtgcaaatggtgaacctggtaaa
gctggtgagaagggacttcctggtgctcctggcctaagaggtcttcctggcaaagatggt
gagacgggagcaggtggaccaccagggcctgctggaccagtaggagagagaggcgaacag
ggtgccccaggaccttctggattccaaggtcttccagggcccccaggtcctccgggtgaa
ggtggaaagccaggtgaccagggtgttcctggagaggctggtgctgccggtcttgttggt
cccagaggcgagcgcggcttcccaggtgaacgtggatctccaggctcccaaggcttgcag
ggtcctcgtggtcttcctggcactcctgggaccgatggacccaaaggcgcaactggtcct
gctggtgccgttggagcacaaggccccccaggtcttcagggaatgcctggtgagagagga
gctgcaggtatttctggacccaagggagacaggggtgatattggtgagaagggaccagaa
ggtgctcctggcaaagatggcggcagaggcttgactggtcccattggtcctcctggccct
gctggcgccaatggagagaagggtgaatctggcccccctggcccagctggcgctgcaggt
gctcgtggtggccccggtgaccgtggtgaacctggtgctcctggccctgctggattcgct
ggtcctcctggtgctgatggacaacctggtgctaaaggcgagcaaggggaaactggccag
aagggagatgctggggccccaggcccacaaggttcatctggtgctcctggcccacagggt
ccaactggtgtgactggtccaaagggagcgcgtggtgcacagggacctccgggtgccact
ggattccctggtgcagcaggaagagttggaccaccaggccctaacggcaatcccggttcc
gcaggccctcccggttctcctggaaaagatggccccaagggtgctcgtggcgatgcaggc
cccactgggcgtgctggcgaccctggtttgcaaggtcctgctggtcccccaggcgagaag
ggagaatctggagaagatggtcctcctggtgctgatggcccgcctggacctcaaggcttg
gcaggtcagagagggatcgttggtctccctggtcagcgcggtgagagaggcttccctggt
ctgccgggtccttccggtgagcctggtaaacaaggatctcccgggggccctggagacaga
ggtccacctggcccagttggtccaccaggcctgactggtccctctggcgaacctggacgt
gagggcaatcctggctcagatggtcccccaggcagagatggttcccctggcgtgaagggt
gatcgtggtgagactggggctgttgggggtcctggagctcccggcccacctggttctcca
ggtcctgttggtccaactggtaaacaaggagatagaggtgaagcgggtgcccaaggtcca
atgggtccttctggtcctgcaggggcacgtggcatgcccggtccacaaggtcctcgtggc
gacaagggtgaagctggcgaggcaggagagagaggtctgaagggtcacaggggattcact
ggcctgcagggtcttcctgggcctcccggtccttctggcgatcaaggtgcatcaggtcct
gctggtccttctggtcccaggggtcccccaggtccagtcggcccctctggcaaagatggc
tctaacggaatgcctggccccattggccctcctggtcctcgtggtcgtagtggagaaact
ggccaagctggtcctcctggaaaccctggaccccctggtcctcctggcccacccggacct
ggcattgacatgtccgcctttgccggcctgggtcagacggagaaaggccccgaccccatg
cgctacatgcgatccgaccaggcttctagcaacctgaggcagcatgatgccgaggtggat
gccaccctgaagtcgctcaacaaccagattgaaagcatccggagccccgagggcagtagg
aagaacccagcccgtacctgccgtgacctaaaactctgccaccccgaatggaagagcggc
gactattggattgaccccaaccagggttgcactttggatgccataaaggttttctgcaat
atggagacgggagagagctgtgtttaccccaagcctagcagcattcccaagaagaactgg
tggacaagcaagagcaaagacaagaaacacatctggtttggagagacaatcaacggaggt
ttccactttagctatggagatgagaacctggctcctaacacggccaacatccagatgacc
ttcctgcgcctcttgtctactgaaggctctcaaaatatcacctaccactgcaagaacagc
attgcctacatggatgaggcttccgggaaccttaagaaagctctcctgatacagggatcc
aacgacgtggagatcagagccgagggcaatagcaggttcacctatagcgccttgcaggat
ggctgcacgaaacacactggtaaatgggggaagacaatcattgaataccgttctcagaag
acctcgcgcctgcccatcattgacattgcacctatggacattggcggagctgatcaagaa
tttggtgttgacattggcccagtgtgcttcttgtaa
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