Zootoca vivipara (common lizard): 118079959
Help
Entry
118079959 CDS
T07275
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118079959 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118079959 (XAB2)
03041 Spliceosome [BR:
zvi03041
]
118079959 (XAB2)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118079959 (XAB2)
Spliceosome [BR:
zvi03041
]
Complex B
Other components
Prp19-related factors
118079959 (XAB2)
Complex C
118079959 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_8
ARM_TT21_C
ARM_TT21
TPR_15
RPN7
NRDE-2
TPR_1
CKAP2_C
TPR_16
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
118079959
NCBI-ProteinID:
XP_034960677
LinkDB
All DBs
Position
LG2:complement(38069910..38086078)
Genome browser
AA seq
895 aa
AA seq
DB search
MTNRTVAGQVTRADERARALNRSCACASLPCASLVRSGWEESKMPELETVLGKRELFFEE
EDLQYEEEILRNPFSVKCWIRYIEFKQNAPKHILNLIYERALKELPGSYKLWYNYLKQRR
KQVKSKCVTDPSYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRITRTRRTFDRALRA
LPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLRSIDRLDEAAVR
LAAVVNDERFISKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTRFTDQLGKLW
CSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETSSEMGR
EEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGRPREIINTYT
EAVQTVDPFKATGKTHTLWVSFAKFYEVNGQIEDARTIFEKATKVNFKQVDELASVWCEY
GEMELRHENYDQALRILRKATAIPAKKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGT
FKSTKAVYDRILDLRIATPQIIINYGLFLEEHTYFEESFKAYERGISLFKWPNVYDIWNT
YLTKFTDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKLEEEYGLARHAMAVYERA
TQAVQPSEQYDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLTDEHAREMCLRFADMECKLG
EIDRARAIYSYCSQMCDPRTTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVN
FMASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPQAKEKILFVRS
DASRSELAELSKQANPDEIDIDLDDGDESEDNEPDEVQLEQKSVPSAVFGGLKDD
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgaccaataggactgttgctggccaagtgacgcgagcggatgagagagcccgagctctg
aaccgcagctgcgcttgtgcgtcattaccgtgcgcctcgctcgttcggtccgggtgggaa
gagtccaagatgccggagctggagacggtgttggggaagcgggagctcttcttcgaagag
gaagacttgcaatatgaagaagaaatattgcgcaaccccttctctgtcaagtgctggatc
cgctacattgagttcaagcaaaatgctcctaagcatatcttgaatctgatctatgagaga
gctcttaaggaattgccaggcagctacaagctatggtataattatcttaagcagcgacgg
aagcaggtaaagagcaagtgtgtaacggatcccagctatgaagaagtgaacaactgtcat
gagcgtgccctggtcttcatgcacaagatgcctcgaatatggctagattactgccagttt
cttatggatcagtgtcggatcacccgcacccgtaggacctttgaccgagcactccgggcc
cttcccatcacacagcaccatcgtatctggccactctacctgaagtttgtgcgtctgtat
ccattacccgagacagctgtacgtgtctaccgcaggtacctgaagctgagcccggagaat
gctgaggaatatattgagtacctgcgctccattgaccgcttggatgaggctgctgtccgc
cttgccgctgtggtgaatgatgaacgcttcatctccaaggagggaaaatccaactatcaa
ctgtggcacgagctctgtgacctcatctcgcagaatccagacaaggtgaagtcgctcaat
gttggggccataatccggggcggcctgactcgcttcaccgaccagttgggcaagctatgg
tgttccttggcagactactacatccgcagtgggcattttgagaaggctcgcgatgtctac
gaagaagccatacagactgtgatgacagtgcgggatttcactcaggtgttcgacagctat
gcccaatttgaggagagcatgatcgctgccaagatggagaccagctctgagatgggacgt
gaggaggaggatgacgtggacctggagctgcgcctggctcgctttgagcagctgatcaca
cgccggcccttgcttcttaacagtgttctcttgcgccagaatcctcacaacgtccacgag
tggcacaagcgggtgaagctgtatgaaggcagacctcgtgagatcatcaacacatacaca
gaagcagtgcagactgtcgacccctttaaagctaccggaaagacacatacgctgtgggtt
tcttttgccaaattctacgaggtcaatggacagatcgaagacgctagaaccatttttgaa
aaggctaccaaggtgaacttcaagcaagtggatgagctggccagcgtgtggtgcgaatat
ggcgagatggagttgcggcacgagaactatgaccaagcgctgcgcatcctgcggaaagcc
acagccatcccagctaagaaagcagagtattttgattcctcagaacctgtacagaaccgt
gtctacaagtccctcaaggtttggtctatgttggctgacctggaagaaagtcttggcacc
ttcaagtctactaaagccgtgtatgaccgcattctggacctgcgcattgccaccccacaa
atcatcattaactatggcctgttcctggaagagcacacctactttgaagagagcttcaag
gcgtatgagaggggcatctcattgttcaagtggccaaatgtgtatgacatttggaacacc
tatctgaccaaattcaccgaccgctatggtggcaagaagttggagcgtgcacgggacctc
tttgaacaggctctagatggctgcccccagaaatatgctaaaactatctacctgctgtat
gccaaactggaggaagaatatgggctggcacgccatgccatggcagtgtatgagagggcc
actcaggctgtgcaaccgtcggagcagtatgacatgtacaatatctacatcaagagagca
gctgaaatctatggggtcacacacacacgtagcatctacgagaaggctattgaggtgctg
acggatgaacacgctcgggagatgtgcctgcgctttgccgacatggagtgcaagctgggt
gaaatagaccgagctcgggccatctattcctactgttcgcagatgtgtgatcccagaact
actgccaatttctggcagacatggaaggaatttgaaatccggcatgggaatgaagacact
atccgggagatgcttcgcattaaacgaagtgtgcaagcaacctacaacacacaagtcaac
ttcatggcctctcagatgctgaaggtgtatagcaatgccacgggaacagtgtctgacctg
gcaccggggcagagtggcatggatgacatgaaactgttagagcagcgggcggagcagttg
gcagctgaagcagagcgagatcagccccaagctaaagagaagatcctgtttgtcaggagt
gatgcttcccgtagtgagctggctgaactctccaagcaggctaaccctgatgagatagac
atcgatttggatgatggagatgaaagtgaagataatgagcctgacgaggtgcagctggag
cagaagagtgttccttccgctgtgtttggaggccttaaggatgattga
DBGET
integrated database retrieval system
