Zootoca vivipara (common lizard): 118080342
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Entry
118080342 CDS
T07275
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03440
Homologous recombination
zvi03450
Non-homologous end-joining
zvi04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118080342 (RAD50)
03450 Non-homologous end-joining
118080342 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
118080342 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zvi03032
]
118080342 (RAD50)
03400 DNA repair and recombination proteins [BR:
zvi03400
]
118080342 (RAD50)
DNA replication proteins [BR:
zvi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
118080342 (RAD50)
DNA repair and recombination proteins [BR:
zvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
118080342 (RAD50)
BRCA1-C complex
118080342 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
118080342 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
TolA_bind_tri
AAA_24
DUF2703
Motif
Other DBs
NCBI-GeneID:
118080342
NCBI-ProteinID:
XP_034961294
LinkDB
All DBs
Position
LG2:complement(51326718..51463937)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIDKMSILGVRSFGVEDKDKQVITFFNPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMLCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGRALKQKFDEIF
SATRYIKALETLRQVRLKQSQRVKECQVELKYLKQNKEKAHEIQNQLSDRETQLAASKEN
VKSIENQLEPLKNRLADIEQNLVKVMRLDNEVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEHLRDMYQNHQKTVREKERRLTECQRELERANKEYQRLNREKSELLFEQGRLQLQADRH
QQNIKTRDSLIQSLAAQLELEGFERPPFNERQNNSFHRLVKERQDKDMEAANQLMREFGE
KETMKQKQIDEIRDKKTGLERTSDLKSDIQNKKQLEAKNLKHELQQLEGSSDRLLELNQE
LTRAKHELDEAEKNCSVKALEVEVQGLQREKANLDSVLRKLDKEMEQLNLNTTIITQMDM
LKKDKADKEEQIRKIKSRHNEELISLLGYFPNKRQLEDWLHSRTKEINHTRDKLAKLNKE
LGLAEQNKHNITAELKRKEEQLSSYEEKLFDVCGSQDFESDLYKLQDEIEKTSKQRAMLA
GATAVYSQFITQLTDEKESCCPVCQRVFETQAELQDVLDDLQSKLRLAPDKLKATESELK
RREKRRDEMMSLKPVRQMVFELQEKDLPDLRNKLQTLNRDIQRLKGDTEEQETLLGTIMP
EEESGKACLQDITLMERYQTDLKDVERKIAQQAAKLQGVDLGRTLLQVSQEKQERQHQWD
TVTGKIELKQTLKQDQQNQVQNLKSAVNELQTEKLEISSRMQRRQQLEEQLVELTTELHS
LNREIKEAKEQLFPLEATLEKLQHEKEELISKKNTSYKVTQEKINEVKEKIKNIHNYIKE
IENYIQEGKEEYKQQKESELDEVKDLLAECEKKKETTNKEIGTIRQNIDTQKIQERWLED
NLTLRKRNEDLKEVEDSIKQYLKEMGEMEAPQLKKDRQHLEEKIEELKRKESLALGRQHG
FEEEILRFKRELRESQFKDAEKKYKEMMIDMRTTELANKDLDIYYKALDQAIMTFHGMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSAADKRRSYNYRVVMIKEGTALDMRGR
CSAGQKVLASLIIRLALAESFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLSRSEYVEKFYRIKKNIDQCSEIVKCSVTSLESYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggattgataaaatgagcatcctcggtgtgaggagctttggagtagaggacaaa
gacaagcaagtgatcactttctttaatcctttaactatcttggtgggaccaaatggtgct
ggaaaaacgacgatcatagaatgtctcaagtatatttgcactggggactttccacctggc
accaaaggaaactcatttgttcatgacccaaaagtcgccaatgaaacagatgtcagagct
caaattcgacttcagtttcgtgatgttaatggagagcttgtagctgtacaaagatccatg
ttatgcacacaaaaagggaagaaaacagaatttaaaactcttgaaggagtcattactaga
acaaagcatggggagaaggtcagtctaagctccaagtgtgcagaaattgaccgagagatg
attagtgccctgggtgtttctaagtctgtgattaacaatgtcattttctgccatcaagaa
gaatccaactggcccctaagtgaaggaagagctctgaaacagaaatttgatgagatcttc
tcagcaaccaggtacattaaggctttggaaacactccgccaggtacgactgaagcaaagc
cagcgagttaaagagtgtcaggtagaactgaagtacttaaaacagaataaagaaaaggca
catgagattcagaatcagctttctgatagggaaactcagttggctgcatccaaggaaaat
gtcaaatctattgagaatcaacttgaacctttgaagaatcgtttggcagacatagagcag
aatcttgtgaaagtaatgagacttgacaatgaagttaaagctctggagagtcggaaaaga
cagatggaaaaggataaccaagatttgcaacaaaagatggagaaggtttttcaaggaact
gatgagcatcttagagatatgtaccaaaaccaccaaaaaactgtgagagaaaaggagagg
agattaacagaatgtcagagagaattggagagagcaaacaaagaatatcaaagactcaac
agagaaaaatcggaattgttgtttgaacaaggtcgtcttcagttgcaagcagatcgccat
caacagaatattaaaaccagggactcattaattcagtctttggcagctcagttggaactg
gaaggatttgaaagaccaccttttaatgaaaggcaaaataatagttttcacaggcttgtg
aaagagagacaggacaaagatatggaagctgctaatcagttaatgagagaatttggtgag
aaggaaacaatgaagcagaagcaaatagacgaaataagagataaaaaaactggacttgaa
agaaccagcgacctgaagtcagacattcaaaataagaagcagcttgaagcaaagaaccta
aaacatgaattgcagcaacttgaagggtcctcagatagactcctagaactgaatcaggaa
cttaccagagcaaaacatgaactggatgaagccgagaagaattgcagtgttaaagcctta
gaagtggaagtacaagggctgcaaagagagaaagcaaatttggacagtgttcttcgaaaa
ctggataaagagatggaacagctgaatttgaatactacaataataactcaaatggacatg
ctgaagaaagataaagctgataaagaggagcaaatcagaaaaataaaatccaggcacaac
gaagagttaatttccttgcttggatatttccctaataaaaggcagcttgaagattggctt
cactctagaactaaagaaattaatcatacaagagacaaacttgccaagctcaacaaagaa
cttggtttggcggagcaaaacaaacataatatcactgctgaactaaaaagaaaagaagag
cagttgtccagttatgaagaaaagctttttgatgtttgtggaagccaggattttgaaagt
gatctatacaaacttcaagatgaaatagaaaaaacatctaaacagcgagccatgcttgct
ggagccacagcagtttattcacagttcattacacaattaacggatgaaaaagaatcgtgt
tgtccagtttgtcagagggtctttgaaacacaggcagaactgcaggatgtgttagatgat
cttcagtccaagttgcgtcttgctccagacaaactgaaggcaacagagtctgagcttaag
agaagggagaagagacgtgatgaaatgatgtcacttaaacctgtcaggcaaatggtattt
gaactccaagaaaaagacctgcccgacttaagaaacaaattacagacactcaacagagat
attcaacgccttaaaggtgatacagaagaacaggaaaccctcctgggtactataatgcct
gaggaggaaagtggtaaagcatgtctgcaagatattacacttatggaaagatatcagact
gatctaaaggatgttgaacgaaaaattgctcagcaggctgctaaactacaaggagtggat
ttaggtcggaccctgctacaagtaagccaggagaagcaagagaggcagcaccagtgggat
acagttactggtaaaattgaattgaagcagactcttaaacaagaccaacaaaatcaagtc
cagaatctgaagagtgcagtgaatgagctgcaaacagagaaacttgaaatttccagccgg
atgcagcgtcgacagcagctcgaagagcagctagtggagctgaccactgagttacattcc
ttgaacagagagatcaaggaagcaaaggagcagctatttcctcttgaagcaactttagaa
aaactgcaacatgagaaagaagagttaataagcaaaaagaacacaagttacaaagtgaca
caggagaagataaatgaggttaaagagaaaattaaaaacatccataactatataaaagag
attgagaactatattcaagaagggaaagaagaatataaacagcaaaaggaatctgaactt
gatgaagtcaaggatctgctagcagaatgtgagaaaaagaaagaaacgacaaataaagaa
attggaactattagacaaaatattgatactcagaagattcaggagcggtggttagaagat
aaccttactttaagaaaaagaaatgaagatctaaaagaagtcgaagatagtataaagcaa
tatttgaaggagatgggggaaatggaagccccacagctgaaaaaggaccgacagcattta
gaggagaaaatagaagaattgaaaagaaaagaaagcttggcgcttggtcgacagcatgga
tttgaggaagaaatccttaggtttaagagagagctgagagaatcacagtttaaagatgct
gagaaaaaatacaaagaaatgatgattgacatgagaacaacggagttggcaaacaaggat
ctggacatttactacaaagcgctggatcaagcaataatgacatttcacggcatgaagatg
gaagaaataaacaagataattcgtgacctttggcgaagcacctacagggggcaagatatt
gaatatatagaaattagatctgatgcagatgagaatgtttctgctgctgacaagaggagg
agttacaattacagagtagtaatgataaaggaaggcactgctctagatatgaggggcaga
tgtagtgctggacaaaaggttcttgcttccctcattatccgccttgctctagcagaatcc
ttttgtctcaactgtggcattcttgcgctggatgagcccaccaccaatcttgatcgggag
aatattgaatctcttgcacatgccttagtagagataatcaaaagtagatcccagcaacgc
aacttccaacttcttgttataactcatgatgaagactttgtggaactattgagtcggtct
gaatatgttgagaaattctacagaattaaaaagaacattgaccagtgttctgagattgta
aaatgtagtgttacatctttggaatcatacgtccattag
DBGET
integrated database retrieval system
