Zootoca vivipara (common lizard): 118081041
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Entry
118081041 CDS
T07275
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03013
Nucleocytoplasmic transport
zvi03015
mRNA surveillance pathway
zvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118081041 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
118081041 (DDX39B)
03015 mRNA surveillance pathway
118081041 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118081041 (DDX39B)
03041 Spliceosome [BR:
zvi03041
]
118081041 (DDX39B)
Enzymes [BR:
zvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118081041 (DDX39B)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118081041 (DDX39B)
Spliceosome [BR:
zvi03041
]
Complex C
Other components
EJC/TREX
118081041 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118081041 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118081041
NCBI-ProteinID:
XP_034963040
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All DBs
Position
LG2:105964009..105975031
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AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGDGVDVPTKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaacgatgttgacaatgaacttctggattatgaagatgatgaggtggaaaat
caggcagctggagatggggtggacgtcccaactaagaaagatgtcaaggggtcctatgtc
tccatccacagttctggcttccgggatttcctgttaaaaccagagctgctgcgtgccatt
gttgattgtggctttgagcacccctctgaagtgcaacacgagtgtatcccacaggccatc
ttggggatggatgtcctgtgccaggccaaatctggtatgggcaagactgccgtcttcgtt
cttgctacactacagcagttggagccagtcactggtcaggtgtcggtgctggtgatgtgt
cacacccgtgagttggccttccagatcagcaaggagtatgagcgcttctccaaatacatg
cccagtgtcaaggtggcggtgttctttgggggcctgtccatcaagaaggacgaagaggtg
ctgaagaagaactgcccccacattgtggtggggaccccgggccgcatcctggccttggcc
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgaatgtgacaag
atgcttgagcagcttgatatgcgccgggacgtccaggagatcttccgcatgaccccgcat
gaaaagcaggtcatgatgttcagtgccacactcagcaaggaaatccgccctgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggatgacgagaccaagctgacgctgcat
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctctttgac
ctgcttgatgtgctggagttcaaccaggtggtgatcttcgtgaagtccgtgcagcgctgc
atcgcgttggctcagctgctagtggagcagaacttcccggccatcgccatccacaggggt
atgccccaggaagagaggttgtctcggtaccagcaattcaaagatttccagcgccgtatc
ttggtggccaccaatctctttggtcgtggcatggacattgagcgggtcaacattgctttc
aattatgacatgccagaggattctgacacctatctgcaccgggtggctcgtgctgggcgc
tttggcacaaagggtctggcgataacttttgtgtcggatgagaatgatgcgaagatcctg
aatgaagtgcaggaccgctttgaagtgaacatcagtgagcttcctgatgagattgacatc
tcttcctacattgaacagacccgataa
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