Zootoca vivipara (common lizard): 118082018
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Entry
118082018 CDS
T07275
Symbol
NUP43
Name
(RefSeq) nucleoporin Nup43 isoform X1
KO
K14305
nuclear pore complex protein Nup43
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118082018 (NUP43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118082018 (NUP43)
03036 Chromosome and associated proteins [BR:
zvi03036
]
118082018 (NUP43)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118082018 (NUP43)
Chromosome and associated proteins [BR:
zvi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118082018 (NUP43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WDR55
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_EML
WD40
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
KNTC1_N
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_SCAP
Beta-prop_HPS5
EIF3I
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
118082018
NCBI-ProteinID:
XP_034964664
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Position
LG3:55019169..55030744
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AA seq
402 aa
AA seq
DB search
MGWWPRRRMAGSQAFPRAIRVLNIDISRDVGHHHHVLGKTAKEGTSGDASHPTSAFPAIL
AIRKRKEKPKENKISIWSVGDFGSLTPNGEYNGEPHLLCDIEHSGDVMDMEFLDQERIVT
ASSTGSVTIFRHHQNNQTLSLNQKWKNAHYYDASGGSASCTGIICNSPEIFTVGEDGRIN
VFEVDHKEAKRTIDNADSSTLHAVTQLRTTEILTVNSIGQLKVWDFRQQGNEPSQIFSLT
GERVPLHCVDRHPSQQHIVATGSQDGMLSIWDVRQGGVPVSLLNAHDAELWEVHFHPSNP
DHLFTCSEDGTLWHWDVSTDISERKSFLHTGGRSTTTYLPHSAVNQSVTSAWLSNDPTKD
RMEITNLIPNPTLSVNSLDVLGSCLVYGTDAESIYVKKNLFA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgggatggtggccaagaagaaggatggcagggagccaagccttccctcgtgccattagg
gtgctcaatattgacatatcacgagatgtggggcatcaccaccacgtcctgggaaaaacc
gccaaggaaggaacgtctggagatgcttcacatcccacctcagcatttcctgcaattcta
gctattagaaaacgaaaggaaaagccaaaggaaaataagatttcaatttggtctgttgga
gacttcggaagtttgaccccaaatggagaatataatggagaaccacatctgctatgtgat
attgaacacagtggtgatgttatggatatggagtttttggatcaggagagaattgtgact
gcttcatccactggaagtgtgaccatattcagacatcatcaaaataatcagactctgtct
ttaaaccagaaatggaaaaatgcacattactatgatgcatctggtggcagtgcatcatgc
actgggatcatatgcaacagtcctgaaatctttactgttggtgaagatggtaggataaat
gtgtttgaagttgaccataaggaagctaaacgtactatagataatgctgacagcagtaca
ctccatgcagttactcagcttcgcacaacagagatcctgacagtcaattccattggccag
ctaaaagtatgggatttcagacagcaaggaaatgagccttcacagatattttcattgaca
ggggaaagagttccattgcactgtgtggataggcatcctagtcagcagcacattgtagcc
acaggcagccaagatggaatgttgagtatttgggatgtaagacaaggtggcgtgccagtt
tccttgctaaatgctcatgacgcagaattatgggaagtccactttcatccttccaatcct
gatcatctgttcacttgttcagaagatggaactctgtggcactgggatgtttccactgac
atttctgaaagaaaatcattccttcacacaggtgggagaagtactactacatatctgcct
cacagtgcagttaatcaatctgtaacaagtgcctggctgagcaatgatcccactaaagac
cgcatggagatcacaaatttaattccaaatccaacattatctgtgaatagtttagatgtt
ttaggatcatgtcttgtatatggaactgatgcagaatctatttatgttaaaaaaaaccta
tttgcataa
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