Zootoca vivipara (common lizard): 118082115
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Entry
118082115 CDS
T07275
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118082115 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zvi03041
]
118082115 (CDC40)
Spliceosome [BR:
zvi03041
]
Complex C
Other components
Step II factors
118082115 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
118082115
NCBI-ProteinID:
XP_034964952
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All DBs
Position
LG3:63389747..63435001
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AA seq
492 aa
AA seq
DB search
MFAPEFGPVNPFRTQQMAAPRNMLSGYTEPAHINDFMFEQQRRTFATYGYALDPSIDDYE
VPTKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAK
PSEEEQRELDEITAKRQKKGKHEDDKPGEEKTILHVKDMYDYQGRSYLHVPQDVGVNLRS
TVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSSSMDCKIKLWEVYGERRCLRT
FIGHSKAVRDICFNNVGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDK
QNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEW
DIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMV
AGYACQVDFSPDMSYVISGDADGKLNIWDWKTTKLYSRLKAHDKVCIGAVWHPHETSKVI
TCGWDGLIKLWD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcacctgagtttgggccggtgaatccatttaggactcaacagatggctgcacct
aggaatatgctttctggatatacagaaccagcacacattaatgatttcatgtttgaacaa
cagagaagaacatttgcaacctatggatatgctttggatccctcaatagatgattatgaa
gttcctactaaatatattggttctgttgaagaagctgaaaagaatcaaggtctgactgtg
tttgaaacgggacaaaagaaaaccgagaagcggaagaaattcaaagagaatgatgcatct
aacattgatggcttcttgggaccgtgggcaaaatatgttgatgaaaaggatgttgcaaaa
ccttcagaagaagaacagagggaactggatgaaataacagcaaagagacaaaagaaaggc
aaacatgaagatgataagcctggagaagagaagactattttgcatgtcaaagatatgtat
gactatcaagggagatcctatcttcatgttcctcaggatgttggggttaacctacgttca
acagtgccccctgagaaatgctaccttcctaagaaacagatccatgtatggtctggtcat
acaaagggagtcagcgctgtcagactgtttcctctttctggccacttgctgttgtcttct
tccatggactgtaaaattaagctctgggaagtatatggtgaacgaagatgcttacgaact
ttcattgggcacagtaaagctgttagagatatatgctttaacaatgttgggactcagttt
ctcagtgctgcatatgatcggtatcttaaactctgggacacggagacaggacagtgtatt
tcaagattcacaaacaggaaagttccctactgtgtcaaattcaatccagatgaagataag
caaaatctttttgtagcaggaatgtcagataagaaaattgtacagtgggatattcgaagt
ggagaaattgttcaggagtatgataggcatttaggtgctgttaacaccattgtttttgtg
gatgaaaatagaagatttgtgagtacatctgatgacaagagtttaagagtctgggaatgg
gacataccagtagatttcaaatacatagcagaaccaagtatgcactcaatgccagcagtg
actttgtctccaaatgggaagtggctggcttgtcaatcgatggacaaccagattttgatt
tttggagctcaaaacagattcaggctaaataaaaagaaaatattcaagggccatatggtg
gctgggtatgcttgccaagtagatttttcacctgacatgagctatgtgatatcaggtgat
gcagacggaaaactgaacatctgggactggaagacaacaaaactatacagtcgattgaaa
gcccatgacaaagtctgtataggtgcagtttggcacccacatgagacatccaaggtaatc
acgtgtggctgggatggtcttataaagctgtgggactga
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