Zootoca vivipara (common lizard): 118082400
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Entry
118082400 CDS
T07275
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118082400 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zvi03021
]
118082400 (CPSF3)
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118082400 (CPSF3)
Transcription machinery [BR:
zvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118082400 (CPSF3)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118082400 (CPSF3)
U7-dependent histone pre-mRNA processing factors
118082400 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
118082400
NCBI-ProteinID:
XP_034965766
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All DBs
Position
LG3:complement(90956933..90973204)
Genome browser
AA seq
692 aa
AA seq
DB search
MAARRRTEAFIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAAVIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRVSGILVKRNFNYHILAPCDLSNYTDLAMSTVTQTQAVPYTGSFSLLYYQLQKL
TGDIKEIEVQDKPALKVFKNITVVQEPGMVVLEWVANPANDMYADTVKTVILEVQSNPKI
QKAVVHKIPKKEEIAAYHKKMEIMLQDIFGEDCVSAKEDNVLSITVDGKTANLSLDTRTV
DHEPGCEDDDETLREMVELAAQRLYDAITPIQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaggagaaggaccgaggcgttcatcccggccgaggagagcgaccagctgttg
attcggcccctaggtgcagggcaagaagtaggaagatcatgcattattctggaatttaaa
ggaaggaagataatgcttgattgcggaatccaccctggcctagaaggaatggatgcactt
ccatatatcgatctgatagacccagctgaaattgatctcctcttgattagtcatttccat
ttggatcactgtggggcattgccatggtttctgcagaagacaagttttaaagggaggacc
ttcatgacccatgctacaaaagcaatttataggtggcttctgtcagattacgtcaaagtt
agcaatatatcagcagacgacatgctgtatacggagacggacttggaagaaagcatggac
aaaatagaaactatcaacttccatgaagtgaaagaggtggcgggaatcaagttctggtgt
taccacgcaggccacgttctgggagcagccatgtttatgattgaaatagctggagtgaag
cttttatacacaggtgacttctcaagacaagaagacaggcacttgatggcagctgagatt
cccaatattaaaccagatattcttataattgaatctacctatggtacgcacatccatgag
aaacgcgaggagcgggaggcgagattctgcaacactgtacacgatattgtaaacagggga
ggcagaggtcttattcctgtgtttgctttgggaagagcacaagaattgcttttgatttta
gatgaatactggcaaaatcatcctgagcttcatgagatacctatatactatgcttcctct
ctggcaaagaaatgcatggccgtgtatcagacctatgtcaatgccatgaatgataaaatt
cgcaagcaaatcaacatcaacaacccatttgtattcaagcacattagtaatctgaagagc
atggatcattttgatgacataggaccaagtgttgtaatggcttcccccggtatgatgcag
agtggtttatccagagagttatttgagagctggtgtactgacaagaggaatggagtcatc
atagcaggatactgtgtggaaggaacacttgctaagcacatcatgtctgaacctgaagaa
attacaactatgtcaggacagaaactcccactgaagatgtccgtggattacatctctttc
tctgcacacacagattaccaacaaaccagcgagttcatccgggcactgaaacctccccat
gtgatattggttcatggtgagcagaatgaaatggccaggctgaaagcggcagtaatacgt
gaatatgaggataatgatgaagttcacatagaagtccacaatcctagaaatactgaagcc
gtaacgctaaacttcagaggagaaaagcttgccaaggttatgggctcattagcagataag
aaaccagaacaagggcagcgtgtttcaggaatactagttaaaagaaattttaactatcac
atacttgctccatgtgacctctccaattacactgatctggctatgagcactgtgacacaa
acacaagctgttccatacacaggatctttcagtctgctttattatcagctacaaaaacta
acaggtgacataaaagaaatagaagtccaggataagccagctttgaaggtttttaaaaac
atcactgtggtccaagagccgggtatggttgtgctggagtgggtagcaaatcctgctaat
gatatgtatgcggacactgtaaaaacagtgatactggaagttcagtccaatcccaaaatt
caaaaagctgtggtacataaaattcctaaaaaagaagagatagctgcatatcacaagaag
atggagattatgcttcaggacatatttggagaagactgtgtaagtgctaaggaagataat
gtactgagcatcactgtggatggaaaaacagcaaatctttcgttggatacacggactgtt
gaccatgaaccaggatgtgaagatgatgatgaaactcttcgggaaatggtggagttagct
gcacagcgactctacgatgccatcacacctatacaataa
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