Zootoca vivipara (common lizard): 118082618
Help
Entry
118082618 CDS
T07275
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi04382
Cornified envelope formation
zvi04510
Focal adhesion
zvi04512
ECM-receptor interaction
zvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118082618 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118082618 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118082618 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118082618 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zvi04147
]
118082618 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118082618 (COL4A1)
Exosome [BR:
zvi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118082618 (COL4A1)
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118082618 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118082618
NCBI-ProteinID:
XP_034966264
LinkDB
All DBs
Position
LG3:113286740..113458623
Genome browser
AA seq
1683 aa
AA seq
DB search
MGRPARESPLALLMAALLLLPLLLLEQRWAAEAKAACSGCGKCDCSGVKGQKGERGLQGL
QGLVGFPGIQGHEGPSGPPGMKGDIGEPGLPGTKGTRGAPGPAGYPGNPGLPGIPGGDGP
PGPSGIPGCNGTKGERGPLGPAGLPGLPGNLGPPGPPGIKGDPGEVIGLIPDGVLKGEKG
FPGHPGLPGTPGLPGIAGPVGPPGPSGRPGSPGPPGPPGEKGHMGLSFQGPKGDKGERGA
MGPPGPQGSVPQQQEKGTIVIRGETGAPGEKGDPGFPGSPGLSEKGQKGEPGKPGPRGRP
GKDGENGEKGRTGETGPSGFPGLPGISGPKGDKGAAGPSGPPGIVIGIGDQEVIGEKGDS
GPPGIPGQKGEPGQKGFPGLAGAPGLPGQPSPGIIGAPGFPGERGEKGERGYPGSSLPGP
KGRDGPPGLPGVPGLPGPPFATDGILECQPGQPGDPGPPGPPGQHGFLGERGEKGVKGDG
CLTCDVPSLAGEPGPQGFPGEPGVAGPKGAKGDRGLSGFEGISGMTGPPGVPGLAGSPGA
KGEPGDVFFDSDLKGDKGDPGYPGPPGVPGREGSPGRDGLPGAPGLKGASGTIGLKGERG
LPGISGFPGPRGDRGFPGSPGIGPSGPPGDKGDKGLSGIPGTPGFPGPKGEAGRVISLPG
SPGAAGIPGPPGIQGIQGDKGDPGIPGRPGLPGEKGQTGPPGIGFPGSPGLPGFPGQSGP
PGVTGEKGESGSPGLPGAQGSHGQKGEPGLGLPGPKGFPGPQGRDGLPGSKGDRGLPGIP
GEKGFPGVTGQPGSRGDPGPSGIPGLQGSPGLPGIGPPGPPGVPGQSGPPGPIGPPGIKG
ERGYPGVPGLDMPGSKGDKGSQGSPGLPGLQGLPGLPGPQGQEGRPGAPGIKGEMGVMGT
PGSQGPPGPSGSSGAPGEKGDRGFPGAVGLRGDPGSKGEKGEAGLRGEPGKMDHVDMESM
KGQKGDKGSKGQLGPLGEKGTAGDPGTPGMAGKDGEPGLPGQAGPKGDQGPPGYQGEPGA
PGQKGSIGEMGLPGPSGEKGVQGLPGEAGKHGLPGAKGVKGEKGQAGLPGIGFPGAPGEK
GDPGKTGIPGVPGGKGERGVPGIPGIPGSPGAKGLPGLQGSPGIPGIPGEKGGKGLPGLD
GFPGLKGEKGDLGPEGPPGAPGERGQPGHDGIPGSPGAKGDPGIPGRGLPGLPGAKGERG
AKGDVGFPGSPGSPGIPGTKGEAGFPGAQGPSGQPGVPGLPGKIGEGPKGDRGPQGRPGL
QGLPGPQGSPGAPGLPGARGEKGSPGWPGTPGRPGLKGDQGLQGIPGNAGFPGAAGPKGD
MGPSGIPGPQGPKGSSGVPGLKGEQGDQGFPGAKGFPGPPGPPGPYQLLKGEPGEPGPAG
PVGPKGFPGPPGPKGQQGVTGPVGVTGLPGTPGFDGMPGQKGETGPAGPPGPRGFPGPPG
PEGMPGSMGPPGSPSVAHGFLVTRHSQSTEEPTCPSGTRLMFHGYSLLYVQGNERAHGQD
LGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFIS
RCAVCEATAMVMAVHSQTIQIPPCPEGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLE
EFRSAPFIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLHSNVSRCQVCM
RRT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgggccgccccgcgcgggaatcgccgctcgcgctcctgatggccgcgctgctgctgctg
ccgctgctgctcctcgagcagcgctgggcggccgaagcgaaggcggcttgttctggctgt
ggaaaatgtgactgtagtggagtaaaagggcaaaaaggtgaaagaggtttgcaaggttta
caaggtttggttggatttcctggaatacaaggacatgaaggtccttccggccccccagga
atgaagggtgatattggagaaccgggactaccaggaacaaaaggaacaagaggtgcacca
ggaccagctggctacccaggaaatcctggccttcctggcatccctggaggagatggcccc
ccaggtccttctggtatcccaggatgcaatggaacaaagggtgaaagaggtcctcttggt
cccgcaggtttacctggattacccggaaatctaggacctccaggacctccaggaataaag
ggagacccaggagaagttattggactgatacctgacggtgtgctaaaaggtgaaaaaggc
tttcctggtcaccctggattaccgggaacacctggtttaccaggtattgcgggccctgtt
ggaccacctggaccttccggaagacctggttctccagggccacctggccccccgggtgag
aagggtcatatggggttaagcttccaaggaccaaagggtgataagggtgagcggggtgcc
atgggccctccaggtccccagggaagtgttcctcaacagcaagagaaaggaaccatagtg
atacggggagagacgggtgctcctggtgaaaagggtgaccctggctttccaggctcacca
ggattaagtgagaaagggcagaaaggtgaacctgggaagcctggtccacggggaagacct
ggaaaggatggagaaaatggagagaagggaagaactggagaaactggcccctcgggattt
ccaggactgcccggaataagtggtcctaaaggagataagggtgcagcaggtccttcagga
cctccaggaatagttatagggataggagatcaagaagtaataggtgagaaaggcgattca
ggtcctcccggaattcctggacaaaaaggtgaaccaggtcaaaaaggttttccaggtcta
gcaggggcaccaggtctaccagggcaacccagtcctgggataataggggcacctggtttt
ccgggcgagagaggagaaaagggtgaacgggggtatcctggatcttcattgcctgggcca
aaaggaagagatggacctccaggacttcccggtgtaccagggcttccaggcccacctttt
gcaacagatggaattctggagtgccaacctgggcagcctggtgatccaggccctcctggg
cctcctggccagcatggcttcttgggagaaaggggagaaaaaggggtaaaaggtgatggc
tgtttgacctgtgatgtacccagcctagctggtgagccaggcccccaggggtttccagga
gaaccaggtgttgcaggaccaaagggtgctaaaggtgacaggggcctttctggatttgag
ggtatttcaggaatgacaggacctccaggtgtacctggactggcaggaagcccaggagca
aaaggggaacctggagatgttttttttgactccgatttaaaaggtgataaaggagatcca
ggataccctggacctccaggtgttcctggaagagaaggaagcccagggcgggatggcctg
ccaggtgccccaggtcttaaaggtgcatcgggaacaattgggttaaaaggagagcgtggc
ctcccaggaataagtggttttccaggaccccgtggagacagaggttttcctggttcccca
gggattgggccgtctgggccacctggtgataaaggggacaaaggtctttcagggattccc
ggcacaccaggatttccaggacccaaaggtgaagctgggcgtgtcatttctctgcctggt
tctccaggagcagctggtattcctggcccccctggaattcagggcatccaaggtgacaag
ggagatccagggatcccaggaaggcctggcctgcctggtgaaaaaggccagacaggtcca
ccaggaatagggtttcctggctcaccagggctcccaggttttcctggtcagtccggccca
ccaggtgtaactggagaaaagggagaatccggttctccagggttaccaggtgcacaaggg
tcacacggacaaaagggtgaacctggattaggtctcccaggccctaaaggttttcctggt
ccacaagggcgagatggacttcccggatcaaaaggtgatcgaggtttgcctggcatacca
ggagaaaaaggatttccaggtgtgactggccagccaggatcccgtggtgaccctggtcct
tctggaataccaggtctacagggctcccccggtttaccaggaataggccctcctggccct
cctggggttccaggacaatctggtcctccaggaccaataggacctccaggaatcaaaggg
gaaaggggctacccgggtgttcctgggctagacatgccagggtccaaaggagataaaggt
agccaaggatctccggggctgccaggattacaaggactgccaggcctacctggcccacaa
ggacaagaaggacgccctggtgccccaggaattaaaggagaaatgggagttatgggcaca
cctggaagccagggtcctcctggtccttcaggatcttctggagctccaggtgaaaaaggt
gacaggggttttcctggagctgtggggctcagaggtgatcctggctcaaagggtgaaaag
ggtgaagctggtctacgaggagagccaggaaaaatggatcatgtggacatggaaagcatg
aaaggccaaaaaggagataaaggaagtaaaggacaactgggaccattaggagagaaggga
actgcaggggaccctggcacaccaggaatggcagggaaggatggggagcctggtctacct
ggacaagcagggccaaaaggggaccaaggccctccaggataccagggtgaaccaggagct
cctggacagaaggggtccataggagaaatgggtctcccaggaccatcaggagaaaagggt
gtgcaaggccttcctggtgaggcagggaaacatgggttacctggagcaaaaggtgtgaaa
ggtgaaaaagggcaggctgggcttccaggaattggcttccccggggctcctggtgagaag
ggagacccaggaaagacaggtattccaggcgtgcctggagggaaaggtgaaagaggtgtt
ccaggaattccaggcatccctggctccccaggtgccaaagggctaccaggtcttcagggt
tctccaggtattccaggaatcccaggtgaaaaaggtggaaagggattaccaggcttagat
ggttttcctggcttaaaaggagaaaaaggtgaccttgggcctgaaggtcccccaggtgct
cctggagaaaggggccagccaggacacgatggaatcccaggctcacctggtgcaaagggt
gacccaggtatacctggtagaggacttcctggacttccaggtgcaaagggagaacgaggt
gcaaaaggagatgtgggcttccctggctccccaggaagtccagggattcctggtacaaag
ggagaagcaggatttcctggcgctcagggtccttcaggccaaccaggtgttcctggatta
ccaggcaaaattggagagggacctaagggtgaccggggacctcaaggccgacctgggctt
caaggacttcctgggccgcaaggctctccaggtgctccaggattaccaggagccagagga
gaaaaaggaagcccaggatggccaggaacaccaggaagacctggactcaaaggtgaccag
gggctgcaaggaatccctggcaatgctggctttccaggagctgctggcccaaaaggtgac
atggggccttctggaattccaggccctcaaggtccaaaaggttcttcgggcgttcctgga
ctcaaaggagaacaaggtgatcaagggtttccaggagctaaaggttttccaggtcctcca
ggtcctccaggcccctaccagctcttgaaaggggaaccaggtgaacctggccccgcaggc
ccagtaggccctaagggatttcctggtcctccaggcccaaaaggccaacaaggtgtaaca
ggacctgtgggtgtgactggtctcccaggcactccgggatttgatggaatgcctggtcag
aaaggagaaactggtcctgctggtcctccaggtcctagaggctttcctggcccacctggt
cctgaaggcatgccagggtcaatgggtccaccagggagtccctctgtagctcacggtttc
cttgtgaccaggcacagccaaagcacagaggagccaacctgcccatctggaacaagactg
atgttccacggctattctttgctttatgtacaaggaaacgaacgggcccatggtcaggac
ttgggcacagctgggagctgtctacgtaaattcagcacaatgcctttcttgttctgcaac
attaacaatgtatgcaattttgcctcaaggaatgattattcttactggttatctacccct
gagccaatgccaatgagtatggctcctattacaggagacaacatcaggcctttcatcagt
cggtgtgctgtatgtgaagcgactgcaatggtgatggcagttcacagtcaaacaattcaa
attccgccatgtccagaaggatggagatcgctgtggataggctactcctttgtgatgcac
accagtgctggtgcagagggctcggggcaagctctggcatctccaggttcctgtctggaa
gagttccgcagtgctcccttcatagaatgccatggcaagggcacctgcaattattatgca
aatgcttatagcttctggcttgcaactattgagagaaatgaaatgttcaagaaacctact
ccttccacactaaaagcaggagatctacactcaaatgttagccgttgccaagtatgtatg
agaagaacatga
DBGET
integrated database retrieval system
