Zootoca vivipara (common lizard): 118082927
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Entry
118082927 CDS
T07275
Symbol
TRIM54
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118082927 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zvi04121
]
118082927 (TRIM54)
Ubiquitin system [BR:
zvi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118082927 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-RING_6
Sina_RING
DUF4363
RHH_9
DUF5799
Prok-RING_4
UvrD_C
CagA
Zn_ribbon_FGT1_2
SpoIISA_toxin
Motif
Other DBs
NCBI-GeneID:
118082927
NCBI-ProteinID:
XP_034966675
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Position
LG3:complement(1895723..1913455)
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AA seq
389 aa
AA seq
DB search
MNFAVGFKPLLGTSQSMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSTSVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRXATLHA
KAEQQLCCEEHEDEKINIYASPVRXPTCSMCKVFGAHKDCEVAPXPTXYKRQKGELSDGI
AMLVAGNDRIQAIITQMEEICKTIEDNARRQKQHLCLRFDSLYSILEERKKELLLEIGRE
QDDKLQRVRGLIRQYGDHLEVSSKLVESAIQSMEEPQMAAYLQQAKELIKKITDMSKVSM
SSHPEPGYESMDHFTVNIDHVAEMLRTIEFQTDAAAEDAEQEGLGPEGGFEAEEGEHLEG
TDAPEGTEDGENLPRLRPKPASASHAGQH
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgccgtgggcttcaagccgctgctggggacttcgcagagcatggacaacctg
gagaagcagctcatttgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgtgccaacgacatcttccaggcctccaaccct
ctctggcagtcgcgcggctccacttcggtgtcctcaggaggtcgcttccggtgcccatcc
tgccggcatgaagtggtgctggaccgtcatggcgtttatgggctgcagcgcaacctcctc
gtggaaaacatcattgacatctacaagcaggaatcctctcggtgagcaaccctccatgcc
aaggcggagcagcagctatgttgtgaggagcacgaggacgagaagatcaacatctacgcc
tcacctgtgaggnnccccacctgctccatgtgcaaagtctttggggcccacaaggactgc
gaagtggccccctgaccaacantctacaagcggcagaagggggagctgagcgatggcatc
gccatgctggtggctggcaacgaccggatccaggccatcatcacccagatggaggagatc
tgcaaaaccattgaggacaatgcccggcgtcagaagcagcacctctgcctgcgctttgac
tccttgtacagcatcctggaagaacgcaagaaggagcttctgctggagatcgggcgggag
caggacgacaagctccagcgggtgcgggggctcatccgccagtatggggaccacctggag
gtctcctccaagctggtggagtcggccatccagtccatggaggagccccaaatggccgcc
tacctccagcaggcaaaggagctgatcaaaaaaatcacagacatgtccaaagtctccatg
agcagccacccagagcctggctatgaaagcatggaccacttcacggtcaacatcgaccac
gtggcggaaatgctgaggacaattgaattccagacagatgctgctgcagaagatgctgag
caggaggggctgggcccagaggggggctttgaggcagaagagggagaacatctggagggg
acagatgcccccgaggggacggaagatggagagaatctgccccgcctgaggccaaagcca
gccagtgcctctcatgcaggtcagcactga
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