Zootoca vivipara (common lizard): 118083046
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Entry
118083046 CDS
T07275
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118083046 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zvi03400
]
118083046 (MSH2)
DNA repair and recombination proteins [BR:
zvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118083046 (MSH2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
MCU
Motif
Other DBs
NCBI-GeneID:
118083046
NCBI-ProteinID:
XP_034966955
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Position
LG3:13773306..13825643
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AA seq
949 aa
AA seq
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MASDFNAALAVSVDIAVGGSPSTSAREACWPDGPNNESSFVRAILALPEKPDTTVRFFER
GDYYTVHGRDALLAAADVFKTRSVIRVLAQGNRKLESVALSKMNFESFLRNLLLIRRYRA
EVYKNKAGNKSTKEGEWYLAYKGSPGNLANFEDVLFSNHDMSSSVGVVGIRISSAEGQKL
VGVAFVDTLMRKLEVCEFPDNDQFSNLEALLVQMGPKECILPIGEAAGEMEKLKQVVQRG
GILITERKKTEFVTKDIVQDLNRLLRTKGKEKVSSATLPEMDLKIATSSLAAVIKYLELL
TDVCNFGQFELSTLNLNQYVTLDHSAVRALNLFQRSSENAQATHCLAGLLNKCRTAQGQR
LVNQWIKQPLVDKNKIEERLNLVEAFVEDAELRQSLQEEVLRRFPDFNRIAKKFPKKATL
QDCYKIYQAVNQIPNVIEALDKVDENSKTLVQAVFTGPLKELLSDFSNFQNMIDETLDMN
TVESHEYLLKPSIEPSLTELRENMDKLEEKMQGVLKAAAKELSLEAGKSIKLECNSQFGH
FFRVTYREEKVLRNNLKYKVLETQKNGVKFSNVQLKSINEEYINIRKEYEKSQDIVVKEI
ISVAAGYKEPIQFLSDVIAHLDAIVSFAHASNAAPTPYVRPTILEKGAGRIVLKASRHPC
IEVQDDVSFIPNDVTFEKDKQMFHIITGPNMGGKSTYIRQTGMVVLMAQIGCFVPCDSAE
ISIVDCILARVGAGDSQLKGVSTFMAEMLETSAILRIATDNSLVIIDELGRGTSTYDGFG
LAWAISEYIASKIGAFCMFATHFHELTALADEIPTVNNLHVTALTTEDTLTMLYRVKNGA
CDQSFGIHVAELAAFPKHVIENAKAKALELGEFQTFGNPQAEEEEPPARNSYKEKQEGEK
LIKDFLSNVKALPLADMSEEDIRTKLKQLKDEVAAKNNSYVNEILSQTK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgacttcaacgcggccttggcggtctctgtggacatcgccgtcggcggctcc
ccctcgacttcggcgcgcgaagcgtgctggccggacgggccgaacaacgagagcagcttc
gtgcgcgccatcctggcgctccccgagaagccggacaccacggtgcgcttcttcgagcgc
ggcgactactacacggtgcatggaagggacgcgctgctggccgcggccgacgttttcaag
acgcggtcggtcattcgagtgctggcgcaaggaaaccggaaacttgaaagtgttgcgctt
agcaagatgaactttgaatcctttttgaggaatctgcttttgattcgtcgctacagggct
gaggtgtataagaataaggcgggaaataaatccaccaaggagggagagtggtatttggca
tataagggctctccagggaaccttgccaattttgaagatgttctgttttctaaccacgat
atgtcatcttctgttggtgttgtgggcattcggatatcctcagctgaagggcaaaaactt
gttggagttgcgtttgtggatactttaatgaggaagctggaagtgtgtgagtttccagat
aatgaccagttttcaaaccttgaagctctgctagttcagatgggccccaaggaatgtatt
ctacctattggagaggctgctggagagatggaaaagctgaaacaggttgttcagagagga
gggattctgattacagagaggaaaaagaccgagtttgtaacaaaggacattgttcaagat
ctcaatcgcttgctgagaacgaaagggaaagagaaggtgtctagtgcaacattacccgaa
atggacctaaagatcgccacctcttccttggctgcagtgattaagtatttagaactctta
actgacgtgtgtaattttgggcaattcgaactctccaccctgaacctcaatcaatatgtc
acactggaccattccgctgtcagggcacttaaccttttccagcgttcttcagaaaatgct
caagctacgcactgtttggctggcctgttaaataagtgcagaacggcccaaggacagagg
ttggtgaaccagtggatcaaacagcccctagtggacaagaacaaaatagaggaaaggcta
aacttggtggaggcctttgtggaagacgcagagctgaggcagtctcttcaagaagaagtg
ctccgtcgctttccggacttcaaccggatagcgaaaaaattccccaagaaagccacactc
caggactgttacaaaatataccaggctgttaatcagataccgaatgtgatagaagcactg
gacaaagttgacgaaaacagcaaaacattagtacaagcagtgttcacaggacctctgaag
gagctgttgtctgacttctccaatttccaaaatatgattgatgaaacgttggacatgaac
acggtggagagccacgaatacctcttgaaaccctccattgagccgagcctcactgagctg
agagagaatatggataagctagaggaaaaaatgcagggtgtgctgaaggcggctgcaaag
gagctaagtctggaagccggcaagagcatcaaattagaatgcaactcccagtttgggcat
tttttccgagtcacctacagggaagagaaggttctgcgaaacaacctgaagtataaggtc
ttggaaacccagaagaacggggtgaagttctctaacgttcaactgaaaagcattaatgaa
gaatacataaatatcagaaaagagtatgaaaaaagccaggacatcgttgttaaggaaatc
atcagcgttgccgcagggtataaggagcccatacagttcctgagtgatgtcatagcccac
ctggatgctattgtcagttttgctcatgcgtcaaatgcagcgccgaccccatacgtacgc
ccaacaattctggaaaagggggcagggaggattgtgctgaaagcctcaagacacccctgc
attgaagttcaagatgacgtttccttcatcccgaacgatgtgacctttgagaaggacaag
cagatgttccatatcattaccggaccaaacatgggagggaaatccacctacatccgccag
acagggatggttgttctcatggcccagattggctgttttgtgccatgtgactctgcagag
ataagcattgtcgattgcatcctggctcgggtaggagctggagacagccagctgaaaggc
gtgtctaccttcatggcggaaatgttggagacgtctgccatccttaggattgcaacagat
aactcattggtgatcattgacgagcttgggagaggaacatctacctatgatggatttgga
ttggcctgggcaatctcggaatatattgccagcaaaattggagcgttttgtatgtttgcc
actcattttcatgaactgaccgcacttgctgatgagattcccaccgtgaataacttgcac
gtcacagcgctaacaacagaggacacactgacaatgctctatcgtgtgaaaaatggggct
tgcgaccagagctttggcatccacgtcgcagagctagctgcttttcccaagcatgtgata
gagaatgccaaggcaaaggccttggagttgggggagttccagacttttggaaatccacag
gccgaggaggaagagccaccagccaggaactcctacaaagagaagcaggaaggtgaaaaa
ttaatcaaggatttcctttctaatgtgaaagcattgccattggcagacatgtctgaggag
gacatcagaaccaaactgaagcagctgaaagatgaagtcgcggcaaaaaacaacagctat
gtgaacgaaatcctttcccaaacaaagtag
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