Zootoca vivipara (common lizard): 118083385
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Entry
118083385 CDS
T07275
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118083385 (COL25A1)
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118083385 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118083385
NCBI-ProteinID:
XP_034967597
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Position
LG4:complement(13618839..13902126)
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AA seq
709 aa
AA seq
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MVGKSPDAKGQDANGEASCWGGQRCCSSRTAPPSSLLAALLLSVASIASCVYLGMKTSDL
QARVLAIETAQGDGSAAASYQLLPSYSLDQLNALMKENVERLLAQKSYEHMARIRIAREA
PPECNCPPGPPGKRGKRGRRGEIGPAGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGF
LSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGLPGEPGKPGEQG
LLGPQGPPGQKGSFGAPGIPGMDGQQGVPGIMGERGVPGLKGDPGQRGERGDSGEAGPKG
DSGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGL
PGTKGERGEAGPPGKGERGEPGAPGPKGRSGESGARGPKGSKGDSGDKGDLGAMGPRGPP
GQKGDQGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGLQGSKGEPGSPGLPGADGE
QGPKGSKGDTGDPGVLGEKGGIGLPGLPGSNGMKGEKGDVGLPGPQGPSIIGPPGPSGPH
GPPGPMGPHGLPGPKGEPGLNGLKGLKGEPGHKGDRGPLGLPGASGLDGKPGPRGMDGPI
GPHGLAGPKGDRGEKGTTGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDVGERGEKGEK
GKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLIAKK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggtggggaaaagcccggacgccaaaggtcaggatgccaacggggaggccagctgctgg
ggaggacagcgctgctgctccagcaggacggcgccccccagctcgctgctggctgccctg
ctgctctcggtggcgtccatcgcttcctgcgtgtatcttgggatgaagaccagtgacctt
caggccagggtcttggccatcgagacggcccaaggggacggatctgctgctgcttcctac
cagctgctgcccagctactctttggatcagctcaatgcactgatgaaggaaaacgtggag
cggcttctggctcagaagtcctatgagcatatggcaagaatcagaatagcaagagaagct
cctccagaatgcaattgcccaccaggtcctcctggtaaacgaggcaagcgaggaagaaga
ggagagattggacctgctggtcaacctggtcctcaaggcccacctggtccaaaaggcgag
aagggagatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggttt
ctctctgctgatcagcagctcattaaacgccgcctcattaagggtgaccaaggacaagct
ggacctccggggcctccggggcctcctggaccaaggggtcctcctggagatactggcaaa
gatggccctcgcggaatgcctggcttaccgggagagccaggaaagccaggtgaacaaggc
ttgttggggcctcaggggcctccaggacaaaagggttcctttggtgcacctggtatccca
gggatggatggacaacagggtgtacctggtataatgggagaaagaggagttcctgggctt
aagggtgaccctggccaacgaggagaaaggggtgattctggagaagctgggcccaaaggt
gactcgggagaaaagggtgaccctggatcttctgctgcaggaattaagggagaacccgga
gaatcaggtcgaccaggacaaaagggtgagcctgggctccctggacttcctggacttcct
gggattaagggtgaaccgggtttcataggaccacagggagaacctggattgccaggattg
ccaggaacaaagggtgaaaggggagaagcaggaccccctgggaaaggtgaacgaggtgag
cctggagctccagggccaaaggggaggtcaggcgaatctggagctagaggcccaaagggg
tcgaagggtgattctggagacaaaggtgatttgggggcaatgggaccaaggggccctcct
ggacaaaaaggtgatcaaggggcaacagagattattgattacaatggcaatatccacgaa
gctttgcagaggattaccaccctaactgtcacgggtcctccaggtcctcctggaccccaa
ggattgcaagggtcaaagggtgaacccggatctccaggattgccaggtgctgatggagag
caggggcctaaaggctcaaaaggtgatacaggtgaccctggagtactaggagaaaaagga
ggaattggacttccaggattgccaggatccaatggtatgaaaggagaaaaaggagatgtt
ggcttgccaggtcctcaaggtccctctatcataggaccaccaggaccttcaggcccacat
ggtccacctggacctatgggacctcatggacttccaggcccaaagggtgaaccagggtta
aatggtcttaaaggattgaagggtgaaccaggtcacaagggtgacagagggccccttggt
cttccaggagcatctggcttagacggaaagccaggaccccggggcatggatggcccaatt
ggtcctcatggccttgcaggtccaaaaggagacagaggtgaaaagggaacaacaggagat
cctgggcccagaggtccatacggcttgcctggcaaagatggcgaacctggccttgatggt
ttccctggtcctcgtggagaaaagggtgatgtaggagaaaggggagaaaagggggaaaag
ggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgcccctggatta
gatgcaccttgcccattgggaccagatggcttaccaatgcctggctgttggcaaaaggga
gtcacaccatggcttattgcaaaaaaatga
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